STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3012Probable acetyltransferase; Similar to Escherichia coli ribosomal-protein-serine acetyltransferase RimL or b1427 SWALL:RIML_ECOLI (SWALL:P13857) (179 aa) fasta scores: E(): 3.6e-16, 38.88% id in 162 aa, and to Shigella flexneri acetylation of N-terminal serine of 30S ribosomal subunit protein l7, acetyl transferase RimL or sf1783 SWALL:AAN43352 (EMBL:AE015198) (183 aa) fasta scores: E(): 9.1e-18, 38.98% id in 177 aa. (191 aa)    
Predicted Functional Partners:
pab
Conserved hypothetical protein; Similar to Erwinia chrysanthemi putative antibiotic biosynthesis protein Pab SWALL:Q93KB5 (EMBL:AJ310612) (293 aa) fasta scores: E(): 3e-67, 58.24% id in 297 aa, and to Xanthomonas axonopodis hypothetical protein Xac2912 xac2912 SWALL:Q8PII5 (EMBL:AE011933) (292 aa) fasta scores: E(): 1.2e-34, 39.59% id in 298 aa.
       0.747
ECA3010
Similar to Yersinia pestis ABC transporter ATP-binding protein ypo1491 SWALL:Q8ZG28 (EMBL:AJ414148) (531 aa) fasta scores: E(): 2.3e-170, 92.45% id in 530 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical ABC transporter ATP-binding protein ybit or b0820 or c0906 or z1042 or ecs0897 SWALL:YBIT_ECOLI (SWALL:P75790) (530 aa) fasta scores: E(): 1.1e-163, 87.54% id in 530 aa.
 
     0.582
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.530
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
  
  
 0.501
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
     
 0.442
ECA3191
Similar to Pseudomonas putida acetyltransferase, GnaT family pp0820 SWALL:AAN66445 (EMBL:AE016777) (187 aa) fasta scores: E(): 1.9e-31, 48.57% id in 175 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1472 SWALL:Q9I3P0 (EMBL:AE004576) (184 aa) fasta scores: E(): 3.5e-39, 61.76% id in 170 aa.
  
   
 0.413
ECA3007
Conserved hypothetical protein; Similar to Escherichia coli O157:H7 orf, hypothetical protein chuy or z4917 or ecs4385 SWALL:Q8X5N4 (EMBL:AE005576) (207 aa) fasta scores: E(): 2.1e-40, 56.79% id in 206 aa, and to Shigella dysenteriae hypothetical 21.8 kDa protein shuY SWALL:O70016 (EMBL:U64516) (207 aa) fasta scores: E(): 4.4e-40, 57.28% id in 206 aa.
 
    0.403
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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