STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
treCSimilar to Escherichia coli trehalose-6-phosphate hydrolase TreC or OlgH or b4239 SWALL:TREC_ECOLI (SWALL:P28904) (551 aa) fasta scores: E(): 1.1e-171, 70.05% id in 551 aa. (563 aa)    
Predicted Functional Partners:
treB
Similar to Escherichia coli PTS system, trehalose-specific IIbc component TreB or b4240 SWALL:PTTB_ECOLI (SWALL:P36672) (473 aa) fasta scores: E(): 2.3e-147, 78.72% id in 470 aa.
 
 
 0.992
crr
PTS system, glucose-specific IIa component; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri PTS system, glucose-specific IIA component Crr or Gsr or Iex or Tgs or Tred or b2417 or c2952 or sf2472 SWALL:PTGA_ECOLI (SWALL:P08837) (168 aa) fasta scores: E(): 5e-53, 95.23% id in 168 aa.
  
 
 0.948
ECA3226
6-phospho-alpha-glucosidase; Similar to Klebsiella pneumoniae 6-phospho-alpha-glucosidase AglB SWALL:AGLB_KLEPN (SWALL:Q9AGA6) (440 aa) fasta scores: E(): 2.2e-85, 50.11% id in 441 aa, and to Escherichia coli probable 6-phospho-alpha-glucosidase GlvG or b3681 SWALL:GLVG_ECOLI (SWALL:P31450) (212 aa) fasta scores: E(): 4.9e-41, 53.81% id in 210 aa.
     
 0.887
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
    
 0.873
ECA0860
Similar to Bacillus subtilis PTS system, beta-glucoside-specific IIabc component BglP or N17C SWALL:PTBA_BACSU (SWALL:P40739) (609 aa) fasta scores: E(): 1.1e-61, 39.06% id in 640 aa, and to Escherichia coli PTS system, arbutin-, cellobiose-, and salicin-specific IIabc component ascf or b2715 SWALL:PTDA_ECOLI (SWALL:P24241) (485 aa) fasta scores: E(): 6.6e-58, 38.55% id in 472 aa.
 
 
 0.862
ECA0661
Similar to Erwinia chrysanthemi PTS system, beta-glucoside-specific IIabc component ArbF SWALL:PTBA_ERWCH (SWALL:P26207) (631 aa) fasta scores: E(): 2.4e-60, 42.76% id in 622 aa, and to Escherichia coli PTS system, beta-glucoside-specific IIabc component BglF or BglC or BglS or b3722 SWALL:PTBA_ECOLI (SWALL:P08722) (625 aa) fasta scores: E(): 6.6e-60, 42.09% id in 639 aa.
  
 
 0.844
nagE
Similar to Escherichia coli PTS system, N-acetylglucosamine-specific IIABC component NagE or pPstN or b0679 SWALL:PTAA_ECOLI (SWALL:P09323) (648 aa) fasta scores: E(): 7.8e-62, 45.16% id in 496 aa.
  
 
 0.844
arbF
Similar to Erwinia chrysanthemi pts system, beta-glucoside-specific IIABC component ArbF SWALL:PTBA_ERWCH (SWALL:P26207) (631 aa) fasta scores: E(): 4.9e-165, 70.14% id in 633 aa, and to Escherichia coli PTS system, beta-glucoside-specific IIABC component BglF or BglC or BglS or b3722 SWALL:PTBA_ECOLI (SWALL:P08722) (625 aa) fasta scores: E(): 2e-130, 57.07% id in 629 aa.
  
 
 0.844
ECA4388
Similar to Erwinia chrysanthemi PTS system, beta-glucoside-specific IIabc component ArbF SWALL:PTBA_ERWCH (SWALL:P26207) (631 aa) fasta scores: E(): 6.6e-81, 37.57% id in 636 aa, and to Escherichia coli PTS system, beta-glucoside-specific IIabc component BglF or BglC or BglS or b3722 SWALL:PTBA_ECOLI (SWALL:P08722) (625 aa) fasta scores: E(): 9.4e-80, 38.6% id in 632 aa.
  
 
 0.844
scrB
Sucrose-6-phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
 
 0.800
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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