STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3035Putative sodium/sulphate transporter; Similar to Yersinia pestis putative ion transport protein ypo2561 SWALL:Q8ZDK1 (EMBL:AJ414152) (610 aa) fasta scores: E(): 1e-192, 80.65% id in 610 aa, and to Photorhabdus temperata YfbS SWALL:AAN08357 (EMBL:AY137386) (585 aa) fasta scores: E(): 5.6e-181, 78.63% id in 585 aa. (627 aa)    
Predicted Functional Partners:
ECA3037
Conserved hypothetical protein; Similar to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein yfbu or stm2335 or sty2565 SWALL:Q8XGJ0 (EMBL:AE008805) (164 aa) fasta scores: E(): 4.1e-58, 87.19% id in 164 aa, and to Yersinia pestis hypothetical protein Ypo2563 SWALL:Q8ZDJ9 (EMBL:AJ414152) (164 aa) fasta scores: E(): 8.8e-58, 82.92% id in 164 aa; Belongs to the UPF0304 family.
       0.559
ECA3036
Similar to Yersinia pestis putative haloacid dehalogenase-like hydrolase ypo2562 or y1625 SWALL:AAM85194 (EMBL:AJ414152) (220 aa) fasta scores: E(): 1.3e-56, 69.9% id in 216 aa, and to Shigella flexneri putative phosphatase yfbt or sf2369 SWALL:AAN43882 (EMBL:AE015253) (216 aa) fasta scores: E(): 1.4e-55, 68.83% id in 215 aa.
       0.509
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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