STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3036Similar to Yersinia pestis putative haloacid dehalogenase-like hydrolase ypo2562 or y1625 SWALL:AAM85194 (EMBL:AJ414152) (220 aa) fasta scores: E(): 1.3e-56, 69.9% id in 216 aa, and to Shigella flexneri putative phosphatase yfbt or sf2369 SWALL:AAN43882 (EMBL:AE015253) (216 aa) fasta scores: E(): 1.4e-55, 68.83% id in 215 aa. (224 aa)    
Predicted Functional Partners:
ECA2398
Similar to Yersinia pestis putative phosphatase y1890 SWALL:AAM85457 (EMBL:AE013792) (221 aa) fasta scores: E(): 3.1e-56, 67.72% id in 220 aa, and to Escherichia coli hypothetical protein ynic or b1727 SWALL:YNIC_ECOLI (SWALL:P77247) (222 aa) fasta scores: E(): 2.1e-55, 68.32% id in 221 aa.
  
  
 0.968
mtlA
Similar to Escherichia coli PTS system, mannitol-specific IIabc component MtlA or b3599 SWALL:PTMA_ECOLI (SWALL:P00550) (637 aa) fasta scores: E(): 1.1e-188, 81.63% id in 637 aa.
  
 
  0.906
mtlD
Similar to Escherichia coli mannitol-1-phosphate 5-dehydrogenase MtlD or b3600 SWALL:MTLD_ECOLI (SWALL:P09424) (382 aa) fasta scores: E(): 5.7e-108, 77.48% id in 382 aa.
    
 0.902
ECA3037
Conserved hypothetical protein; Similar to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein yfbu or stm2335 or sty2565 SWALL:Q8XGJ0 (EMBL:AE008805) (164 aa) fasta scores: E(): 4.1e-58, 87.19% id in 164 aa, and to Yersinia pestis hypothetical protein Ypo2563 SWALL:Q8ZDJ9 (EMBL:AJ414152) (164 aa) fasta scores: E(): 8.8e-58, 82.92% id in 164 aa; Belongs to the UPF0304 family.
 
    0.822
ECA3365
Similar to Yersinia pestis putative hydrolase ypo3303 or y0885 SWALL:Q8ZBU0 (EMBL:AJ414156) (188 aa) fasta scores: E(): 1.9e-51, 72.34% id in 188 aa, and to Escherichia coli hypothetical protein yqab or b2690 SWALL:YQAB_ECOLI (SWALL:P77475) (188 aa) fasta scores: E(): 4.7e-47, 65.42% id in 188 aa.
  
     0.736
ECA3035
Putative sodium/sulphate transporter; Similar to Yersinia pestis putative ion transport protein ypo2561 SWALL:Q8ZDK1 (EMBL:AJ414152) (610 aa) fasta scores: E(): 1e-192, 80.65% id in 610 aa, and to Photorhabdus temperata YfbS SWALL:AAN08357 (EMBL:AY137386) (585 aa) fasta scores: E(): 5.6e-181, 78.63% id in 585 aa.
       0.509
ECA1400
Similar to Escherichia coli putative nucleoside transporter YegT or b2098 SWALL:YEGT_ECOLI (SWALL:P76417) (425 aa) fasta scores: E(): 7e-56, 38.47% id in 408 aa, and to Salmonella typhimurium, and Salmonella typhi putative mfs family transport protein YegT or stm2142 or sty2371 SWALL:Q8XEM8 (EMBL:AE008795) (423 aa) fasta scores: E(): 1.1e-55, 39.11% id in 409 aa.
  
  
 0.488
hcaT
Similar to Escherichia coli probable 3-phenylpropionic acid transporter HcaT or b2536 SWALL:HCAT_ECOLI (SWALL:Q47142) (379 aa) fasta scores: E(): 1e-102, 68.17% id in 377 aa.
  
  
 0.487
ECA3038
Putative membrane protein; Similar to Yersinia pestis hypothetical protein ypo2564 or y1623 SWALL:YP64_YERPE (SWALL:Q8ZDJ8) (151 aa) fasta scores: E(): 2.9e-52, 79.47% id in 151 aa, and to Photorhabdus temperata b2295 SWALL:AAN08358 (EMBL:AY137386) (151 aa) fasta scores: E(): 1.6e-45, 69.53% id in 151 aa.
       0.481
palI
Sucrose isomerase; Similar to Erwinia rhapontici sucrose isomerase PalI SWALL:Q9AI64 (EMBL:AF279281) (600 aa) fasta scores: E(): 1.7e-171, 70.25% id in 558 aa.
  
 0.406
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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