STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA3044Similar to Salmonella typhimurium putative glutathione S-transferase yfcg or stm2349 SWALL:Q8ZNC9 (EMBL:AE008805) (215 aa) fasta scores: E(): 2.4e-60, 71.98% id in 207 aa, and to Escherichia coli hypothetical GST-like protein yfcg or b2302 SWALL:YFCG_ECOLI (SWALL:P77526) (215 aa) fasta scores: E(): 5.7e-59, 71.01% id in 207 aa. (208 aa)    
Predicted Functional Partners:
ECA1072
Similar to Pseudomonas putida glutathione S-transferase family protein pp2474 SWALL:AAN68086 (EMBL:AE016783) (206 aa) fasta scores: E(): 4.5e-48, 60.97% id in 205 aa, and to Vibrio vulnificus glutathione S-transferase vv20508 SWALL:AAO07458 (EMBL:AE016809) (205 aa) fasta scores: E(): 1e-39, 55.39% id in 204 aa; Belongs to the GST superfamily.
  
  
 0.579
rpoZ
DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
 
 0.499
rpoA
DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.498
gor
Similar to Escherichia coli glutathione reductase Gor SWALL:GSHR_ECOLI (SWALL:P06715) (450 aa) fasta scores: E(): 3.8e-155, 86.66% id in 450 aa and to to Yersinia pestis glutathione reductase Gor SWALL:Q8ZA43 (EMBL:AJ414160) (450 aa) fasta scores: E(): 7.8e-158, 88.66% id in 450 aa.
  
 0.497
adhC
Similar to Escherichia coli alcohol dehydrogenase class III AdhC or b0356 SWALL:ADH3_ECOLI (SWALL:P25437) (369 aa) fasta scores: E(): 1.7e-102, 70.46% id in 369 aa, and to Yersinia pestis alcohol dehydrogenase class III, formaldehyde dehydrogenase adhc or y2667 SWALL:AAM86220 (EMBL:AE013869) (379 aa) fasta scores: E(): 2.3e-130, 91.93% id in 372 aa; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
  
  
 0.483
folX
D-erythro-7,8-dihydroneopterin triphosphate epimerase; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri D-erythro-7,8-dihydroneopterin triphosphate epimerase FolX or b2303 or c2846 or z3565 or ecs3187 or sf2379 SWALL:FOLX_ECOLI (SWALL:P80449) (119 aa) fasta scores: E(): 1.1e-32, 77.39% id in 115 aa.
  
    0.480
gloA
Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.
 
    0.465
gst
Glutathione S-transferase; Similar to Escherichia coli, and Escherichia coli O157:H7 glutathione s-transferase Gst or b1635 or z2647 or ecs2344 SWALL:GT_ECOLI (SWALL:P39100) (201 aa) fasta scores: E(): 3.8e-39, 53.23% id in 201 aa; Belongs to the GST superfamily.
  
   
 0.464
ECA2791
Putative glutathione S-transferase; Similar to Erwinia chrysanthemi hypothetical protein SWALL:Q8KKB6 (EMBL:AF503595) (205 aa) fasta scores: E(): 1.4e-53, 72.22% id in 180 aa, and to Agrobacterium tumefaciens glutathione S-transferase atu1394 or agr_c_2575 SWALL:Q8UFK3 (EMBL:AE009100) (254 aa) fasta scores: E(): 3.8e-56, 58.77% id in 228 aa.
 
 
 0.462
sspB
Stringent starvation protein B; Similar to Escherichia coli, and Escherichia coli O157:H7 stringent starvation protein B SspB or b3228 or z4586 or ecs4101 SWALL:SSPB_ECOLI (SWALL:P25663) (165 aa) fasta scores: E(): 3e-39, 71.42% id in 168 aa.
  
  
 0.457
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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