STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hisMHistidine ABC transporter permease protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri histidine transport system permease protein HisM or b2307 or c2849 or z3569 or ecs3191 or sf2383 SWALL:HISM_ECOLI (SWALL:P20091) (238 aa) fasta scores: E(): 2.8e-79, 79.41% id in 238 aa. (238 aa)    
Predicted Functional Partners:
hisP
Similar to Escherichia coli histidine transport ATP-binding protein HisP or b2306 SWALL:HISP_ECOLI (SWALL:P07109) (257 aa) fasta scores: E(): 1.5e-73, 82.87% id in 257 aa.
 
 
 0.999
hisQ
Similar to Escherichia coli histidine transport system permease protein HisQ or b2308 SWALL:HISQ_ECOLI (SWALL:P52094) (228 aa) fasta scores: E(): 3.5e-63, 74.44% id in 227 aa.
 
 
0.997
hisJ
Histidine-binding periplasmic protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 histidine-binding periplasmic protein precursor HisJ or b2309 or c2851 or z3571 or ecs3193 SWALL:HISJ_ECOLI (SWALL:P39182) (260 aa) fasta scores: E(): 1.8e-69, 73.28% id in 262 aa; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.993
ECA0828
Putative amino acid-binding periplasmic protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 histidine-binding periplasmic protein precursor HisJ or b2309 or c2851 or z3571 or ecs3193 SWALL:HISJ_ECOLI (SWALL:P39182) (260 aa) fasta scores: E(): 8.9e-35, 38.22% id in 259 aa, and to Pseudomonas aeruginosa periplasmic histidine-binding protein HisJ or pa2923 SWALL:Q9HZS4 (EMBL:AE004718) (261 aa) fasta scores: E(): 2.8e-35, 40.15% id in 259 aa; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.987
occP
Octopine permease ATP-binding protein P; Similar to Agrobacterium tumefaciens, and Agrobacterium tumefaciens octopine permease ATP-binding protein P OccP SWALL:OCCP_AGRTU (SWALL:P35117) (262 aa) fasta scores: E(): 4.5e-56, 63.85% id in 249 aa.
 
 
 0.936
artJ
Similar to Escherichia coli arginine-binding periplasmic protein 2 precursor ArtJ or b0860 SWALL:ARTJ_ECOLI (SWALL:P30860) (243 aa) fasta scores: E(): 1.1e-71, 78.6% id in 243 aa; Belongs to the bacterial solute-binding protein 3 family.
 
 0.884
artI
Similar to Escherichia coli arginine-binding periplasmic protein 1 precursor ArtI or b0863 SWALL:ARTI_ECOLI (SWALL:P30859) (243 aa) fasta scores: E(): 4e-67, 72.42% id in 243 aa; Belongs to the bacterial solute-binding protein 3 family.
 
 0.865
artQ
Arginine transport system permease protein; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri arginine transport system permease protein ArtQ or b0862 or c0995 or sf0816 SWALL:ARTQ_ECOLI (SWALL:P30861) (238 aa) fasta scores: E(): 1.2e-79, 84.87% id in 238 aa.
 
 
0.849
occQ
Octopine transport system permease protein; Similar to Agrobacterium tumefaciens, and Agrobacterium tumefaciens octopine transport system permease protein OccQ SWALL:OCCQ_AGRTU (SWALL:P35119) (237 aa) fasta scores: E(): 3e-44, 51.94% id in 231 aa, and to Rhizobium meliloti octopine transport system permease protein OccQ SWALL:OCCQ_RHIME (SWALL:P72295) (237 aa) fasta scores: E(): 9.3e-43, 50.64% id in 233 aa.
 
 
0.847
glnH
Glutamine-binding periplasmic protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 glutamine-binding periplasmic protein precursor GlnH or b0811 or c0896 or z1033 or ecs0889 SWALL:GLNH_ECOLI (SWALL:P10344) (248 aa) fasta scores: E(): 3.8e-79, 87.09% id in 248 aa; Belongs to the bacterial solute-binding protein 3 family.
 
 0.795
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.