STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dedAPutative membrane protein; Similar to Escherichia coli, and Escherichia coli O157:H7 deda protein DedA or b2317 or z3579 or ecs3201 SWALL:DEDA_ECOLI (SWALL:P09548) (219 aa) fasta scores: E(): 2.8e-75, 86.11% id in 216 aa, and to Salmonella typhimurium, and Salmonella typhi putative DedA family protein or stm2367 or sty2598 SWALL:Q8XEL7 (EMBL:AE008806) (219 aa) fasta scores: E(): 1.5e-75, 86.11% id in 216 aa. (220 aa)    
Predicted Functional Partners:
flgN
Flagella synthesis protein; Similar to Salmonella typhimurium, and Salmonella typhi flagella synthesis protein FlgN or stm1171 or sty1210 SWALL:FLGN_SALTY (SWALL:P37406) (140 aa) fasta scores: E(): 2.4e-14, 38.88% id in 144 aa, and to Yersinia enterocolitica flagella synthesis protein FlgN SWALL:FLGN_YEREN (SWALL:Q56854) (147 aa) fasta scores: E(): 6.2e-22, 46.85% id in 143 aa.
      
 0.498
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
    0.479
mtfA
Conserved hypothetical protein; Involved in the regulation of ptsG expression by binding and inactivating Mlc.
  
  
 0.473
inh
Protease inhibitor; Similar to Pectobacterium carotovorum subsp. carotovorum protease inhibitor Inh SWALL:Q9RB19 (EMBL:AF141295) (103 aa) fasta scores: E(): 4.8e-37, 89.32% id in 103 aa, and to Erwinia chrysanthemi proteinase inhibitor precursor Inh SWALL:INH_ERWCH (SWALL:P18958) (120 aa) fasta scores: E(): 7.6e-21, 57.28% id in 103 aa.
      
 0.469
polB
DNA polymerase II; Similar to Escherichia coli DNA polymerase II PolB or DinA or b0060 SWALL:DPO2_ECOLI (SWALL:P21189) (782 aa) fasta scores: E(): 0, 72.25% id in 782 aa.
      
 0.468
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
      
 0.462
ECA3059
Similar to Shewanella violacea aspartate-semialdehyde dehydrogenase Asd SWALL:DHAS_SHEVI (SWALL:Q56734) (338 aa) fasta scores: E(): 1.3e-55, 45.1% id in 337 aa, and to Yersinia pestis putative aspartate-semialdehyde dehydrogenase Asd or ypo2765 or usg or y1598 SWALL:Q8ZD28 (EMBL:AJ414153) (336 aa) fasta scores: E(): 2.8e-104, 80.59% id in 335 aa.
     
 0.458
accD
Acetyl-coenzyme A carboxylase carboxyl transferase beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
       0.448
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
     
 0.443
lrp
Leucine-responsive regulatory protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Shigella flexneri, and Enterobacter aerogenes leucine-responsive regulatory protein Lrp or AlsB or LivR or Ihb or OppI or b0889 or c1026 or z1234 or ecs0974 or sf0848 SWALL:LRP_ECOLI (SWALL:P19494) (163 aa) fasta scores: E(): 1.3e-61, 98.77% id in 163 aa.
      
 0.415
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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