STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3066Conserved hypothetical protein; Similar to Salmonella typhimurium putative cytoplasmic protein yfcm or stm2381 SWALL:Q8ZNB1 (EMBL:AE008807) (182 aa) fasta scores: E(): 5.4e-64, 77.9% id in 181 aa, and to Shigella flexneri putative transporting ATPase yfcm or sf2402 SWALL:AAN43915 (EMBL:AE015256) (182 aa) fasta scores: E(): 6.4e-64, 77.9% id in 181 aa. (181 aa)    
Predicted Functional Partners:
ECA3067
Similar to Yersinia pestis putative membrane protein ypo2753 or y1587 SWALL:Q8ZD39 (EMBL:AJ414153) (268 aa) fasta scores: E(): 2e-74, 73.48% id in 264 aa, and to Salmonella typhimurium, and Salmonella typhi putative permease yfca or stm2382 or sty2614 SWALL:Q8XEQ5 (EMBL:AE008807) (269 aa) fasta scores: E(): 5.2e-72, 71.37% id in 262 aa.
  
    0.844
mepA
Penicillin-insensitive murein endopeptidase; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus. Belongs to the peptidase M74 family.
       0.746
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
       0.746
ECA3065
Similar to Yersinia pestis hypothetical protein Ypo2755 SWALL:Q8ZD37 (EMBL:AJ414153) (92 aa) fasta scores: E(): 6.4e-25, 75% id in 92 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein yfcl or b2325 or z3588 or ecs3209 SWALL:YFCL_ECOLI (SWALL:P76496) (92 aa) fasta scores: E(): 1.3e-20, 67.41% id in 89 aa.
  
    0.733
ECA3977
Similar to Yersinia pestis hypothetical protein ypo0353 or y0611 SWALL:Q8ZIY1 (EMBL:AJ414142) (342 aa) fasta scores: E(): 1e-110, 80.11% id in 342 aa, and to Escherichia coli O6 hypothetical protein yjek or c5231 SWALL:AAN83653 (EMBL:AE016771) (342 aa) fasta scores: E(): 7.7e-107, 75.73% id in 342 aa.
  
   
 0.671
prmB
Conserved hypothetical protein; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily.
       0.580
efp
Elongation factor P; Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family.
  
   
 0.506
poxA
Putative lysyl-tRNA synthetase; With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF- P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta-lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P; Belongs to the class-II aminoacyl-tRNA synthetase family. EpmA subfamily.
  
   
 0.504
ECA0949
Putative membrane protein; Similar to Xanthomonas axonopodis hypothetical protein xac4298 SWALL:Q8PEP7 (EMBL:AE012083) (259 aa) fasta scores: E(): 3.4e-42, 45.2% id in 250 aa, and to Pseudomonas putida conserved hypothetical protein pp3933 SWALL:AAN69527 (EMBL:AE016788) (253 aa) fasta scores: E(): 3.7e-39, 42.57% id in 249 aa.
  
    0.452
ECA2732
Putative elongation factor; Similar to Salmonella typhimurium putative elongation factor yeip or stm2211 SWALL:Q8ZNK3 (EMBL:AE008798) (267 aa) fasta scores: E(): 5.2e-62, 84.21% id in 190 aa, and to Escherichia coli O157:H7 putative elongation factor yeip or z3430 or ecs3063 SWALL:Q8XE90 (EMBL:AE005449) (275 aa) fasta scores: E(): 5.3e-62, 84.73% id in 190 aa.
  
   
 0.431
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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