STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3073Putative exported protein; Similar to Myxococcus xanthus protein U precursor Pru SWALL:PRU_MYXXA (SWALL:P27755) (179 aa) fasta scores: E(): 1.8e-07, 29.57% id in 186 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4648 SWALL:Q9HVE4 (EMBL:AE004879) (182 aa) fasta scores: E(): 4.5e-18, 39.78% id in 186 aa. (182 aa)    
Predicted Functional Partners:
ECA3075
Putative fimbrial chaperone; Similar to Pseudomonas aeruginosa probable pili assembly chaperone pa4651 SWALL:Q9HVE1 (EMBL:AE004879) (262 aa) fasta scores: E(): 1.3e-45, 49.78% id in 237 aa, and to Pseudomonas putida type 1 pili usher pathway chaperone CsuC or pp2361 SWALL:AAN67974 (EMBL:AE016782) (264 aa) fasta scores: E(): 8.6e-40, 45.6% id in 239 aa.
 
 
 0.921
ECA3076
Putative fimbrial usher protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa4652 SWALL:Q9HVE0 (EMBL:AE004879) (790 aa) fasta scores: E(): 1.3e-148, 51.74% id in 775 aa, and to Pseudomonas putida type 1 pili usher protein CsuD or pp2362 SWALL:AAN67975 (EMBL:AE016782) (797 aa) fasta scores: E(): 1.6e-125, 43.44% id in 778 aa.
 
  
 0.870
ECA3077
Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa4653 SWALL:Q9HVD9 (EMBL:AE004879) (315 aa) fasta scores: E(): 3.6e-55, 47.2% id in 322 aa, and to Yersinia pestis putative membrane protein ypo1695 or y1857 SWALL:Q8ZFK8 (EMBL:AJ414150) (329 aa) fasta scores: E(): 7.2e-33, 36.95% id in 341 aa.
 
     0.845
ECA3074
Similar to Yersinia pestis putative exported protein ypo1698 SWALL:Q8ZFK5 (EMBL:AJ414150) (185 aa) fasta scores: E(): 3.6e-15, 33.88% id in 180 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4650 SWALL:Q9HVE2 (EMBL:AE004879) (180 aa) fasta scores: E(): 7.9e-30, 55.26% id in 152 aa.
 
    
0.613
ECA0941
Putative fimbrial chaperone; Similar to Proteus mirabilis chaperone protein PmfD SWALL:PMFD_PROMI (SWALL:P53520) (254 aa) fasta scores: E(): 8.9e-43, 46.72% id in 229 aa, and to Escherichia coli sfpd SWALL:Q933Y4 (EMBL:AJ131667) (243 aa) fasta scores: E(): 8e-41, 44.93% id in 247 aa, and to Escherichia coli chaperone protein PapD SWALL:PAPD_ECOLI (SWALL:P15319) (239 aa) fasta scores: E(): 2e-36, 42.98% id in 228 aa, and to Escherichia coli PrfD SWALL:CAD42028 (EMBL:AJ494981) (239 aa) fasta scores: E(): 2e-36, 42.98% id in 228 aa.
 
 
 0.524
ECA1405
Putative exported protein; Similar to Yersinia pestis putative sugar ABC transporter ypo1517 or y2651 SWALL:Q8ZG03 (EMBL:AJ414148) (363 aa) fasta scores: E(): 3.6e-111, 84.07% id in 358 aa, and to Rhizobium loti ABC transporter binding protein mlr7288 SWALL:Q986M5 (EMBL:AP003011) (340 aa) fasta scores: E(): 1.4e-24, 31.88% id in 345 aa.
  
     0.505
ECA1753
Similar to Yersinia pestis hypothetical protein Ypo1437 SWALL:Q8ZG75 (EMBL:AJ414148) (211 aa) fasta scores: E(): 7.1e-38, 53.36% id in 208 aa, and to Escherichia coli hypothetical protein yccr or b0959 SWALL:YCCR_ECOLI (SWALL:P75869) (209 aa) fasta scores: E(): 9.7e-27, 42.78% id in 194 aa.
  
    0.464
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.