STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3076Putative fimbrial usher protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa4652 SWALL:Q9HVE0 (EMBL:AE004879) (790 aa) fasta scores: E(): 1.3e-148, 51.74% id in 775 aa, and to Pseudomonas putida type 1 pili usher protein CsuD or pp2362 SWALL:AAN67975 (EMBL:AE016782) (797 aa) fasta scores: E(): 1.6e-125, 43.44% id in 778 aa. (793 aa)    
Predicted Functional Partners:
ECA3075
Putative fimbrial chaperone; Similar to Pseudomonas aeruginosa probable pili assembly chaperone pa4651 SWALL:Q9HVE1 (EMBL:AE004879) (262 aa) fasta scores: E(): 1.3e-45, 49.78% id in 237 aa, and to Pseudomonas putida type 1 pili usher pathway chaperone CsuC or pp2361 SWALL:AAN67974 (EMBL:AE016782) (264 aa) fasta scores: E(): 8.6e-40, 45.6% id in 239 aa.
 
 0.999
ECA3077
Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa4653 SWALL:Q9HVD9 (EMBL:AE004879) (315 aa) fasta scores: E(): 3.6e-55, 47.2% id in 322 aa, and to Yersinia pestis putative membrane protein ypo1695 or y1857 SWALL:Q8ZFK8 (EMBL:AJ414150) (329 aa) fasta scores: E(): 7.2e-33, 36.95% id in 341 aa.
 
 
 0.997
ECA3074
Similar to Yersinia pestis putative exported protein ypo1698 SWALL:Q8ZFK5 (EMBL:AJ414150) (185 aa) fasta scores: E(): 3.6e-15, 33.88% id in 180 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4650 SWALL:Q9HVE2 (EMBL:AE004879) (180 aa) fasta scores: E(): 7.9e-30, 55.26% id in 152 aa.
 
 
 0.995
ECA3073
Putative exported protein; Similar to Myxococcus xanthus protein U precursor Pru SWALL:PRU_MYXXA (SWALL:P27755) (179 aa) fasta scores: E(): 1.8e-07, 29.57% id in 186 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4648 SWALL:Q9HVE4 (EMBL:AE004879) (182 aa) fasta scores: E(): 4.5e-18, 39.78% id in 186 aa.
 
 
 0.992
ECA0941
Putative fimbrial chaperone; Similar to Proteus mirabilis chaperone protein PmfD SWALL:PMFD_PROMI (SWALL:P53520) (254 aa) fasta scores: E(): 8.9e-43, 46.72% id in 229 aa, and to Escherichia coli sfpd SWALL:Q933Y4 (EMBL:AJ131667) (243 aa) fasta scores: E(): 8e-41, 44.93% id in 247 aa, and to Escherichia coli chaperone protein PapD SWALL:PAPD_ECOLI (SWALL:P15319) (239 aa) fasta scores: E(): 2e-36, 42.98% id in 228 aa, and to Escherichia coli PrfD SWALL:CAD42028 (EMBL:AJ494981) (239 aa) fasta scores: E(): 2e-36, 42.98% id in 228 aa.
 
 0.939
ECA0942
Putative outer membrane usher protein; Similar to Photorhabdus luminescens MrfC SWALL:Q93MT4 (EMBL:AF396083) (851 aa) fasta scores: E(): 6.4e-137, 43.95% id in 810 aa, and to Proteus mirabilis outer membrane usher protein PmfC precursor pmfC SWALL:PMFC_PROMI (SWALL:P53514) (828 aa) fasta scores: E(): 3e-132, 42.75% id in 807 aa, and to Escherichia coli outer membrane usher protein PapC SWALL:PAPC_ECOLI (SWALL:P07110) (836 aa) fasta scores: E(): 1.6e-126, 43.34% id in 849 aa.
  
  
0.643
ECA0939
Putative fimbrial protein; Similar to Xenorhabdus nematophilus fimbrial major subunit MrxA SWALL:Q8KRT4 (EMBL:AF525420) (179 aa) fasta scores: E(): 9.2e-13, 35% id in 180 aa, and to Salmonella typhimurium fimbrial subunit BcfA or stm0021 SWALL:Q9X604 (EMBL:AF130422) (180 aa) fasta scores: E(): 7.3e-10, 30.68% id in 176 aa, and to Escherichia coli PapA SWALL:Q9AM11 (EMBL:AF332519) (159 aa) fasta scores: E(): 6.2e-08, 27.77% id in 162 aa, and to Escherichia coli adhesion protein PapA SWALL:Q9KHX0 (EMBL:AF247355) (171 aa) fasta scores: E(): 4.8e-07, 26.66% id in 150 aa.
 
 0.642
ECA0943
Similar to Escherichia coli f15 P-fimbriae major subunit precursor FfiA SWALL:P71218 (EMBL:Y08929) (168 aa) fasta scores: E(): 2.8e-17, 38.5% id in 174 aa, and to Serratia marcescens fimbria A protein precursor SmfA SWALL:FMA_SERMA (SWALL:P13421) (174 aa) fasta scores: E(): 1.3e-16, 39.34% id in 183 aa.
 
 0.598
ECA0980
Autotransporter; Similar to Pseudomonas fluorescens serine protease homologue PspB SWALL:Q9ZNI5 (EMBL:AB015053) (1036 aa) fasta scores: E(): 1.6e-25, 28.66% id in 1106 aa, and to Serratia marcescens extracellular serine protease precursor SWALL:PRTT_SERMA (SWALL:P29805) (1045 aa) fasta scores: E(): 1.1e-16, 25.6% id in 1082 aa.
  
    0.567
virB2
Putative conjugal transfer protein; Similar to Escherichia coli VirB2 protein VirB2 SWALL:Q91UX6 (EMBL:AJ297913) (102 aa) fasta scores: E(): 0.0022, 30.66% id in 75 aa.
   
    0.545
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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