STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vacJLipoprotein; Similar to Shigella flexneri VacJ lipoprotein precursor VacJ or sf2424 SWALL:VACJ_SHIFL (SWALL:P43262) (251 aa) fasta scores: E(): 1.2e-75, 71.71% id in 251 aa, and to Yersinia pestis vacj lipoprotein VacJ or ypo2743 SWALL:Q8ZD49 (EMBL:AJ414153) (254 aa) fasta scores: E(): 3.3e-80, 76.68% id in 253 aa. (253 aa)    
Predicted Functional Partners:
ECA0298
Putative exported protein; Similar to Escherichia coli, and Shigella flexneri protein yrbc precursor yrbc or b3192 or sf3232 SWALL:AAN44698 (EMBL:U18997) (211 aa) fasta scores: E(): 1e-62, 76.77% id in 211 aa, and to Shigella flexneri YrbC SWALL:AAF21249 (EMBL:AF053073) (211 aa) fasta scores: E(): 1e-62, 76.77% id in 211 aa.
 
 
 
 0.959
vpsC
Putative exported protein; Similar to Shigella flexneri VpsC SWALL:Q9RHA1 (EMBL:AF053073) (183 aa) fasta scores: E(): 5.2e-45, 68.64% id in 185 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein yrbd precursor yrbd or b3193 or z4556 or ecs4072 SWALL:YRBD_ECOLI (SWALL:P45391) (183 aa) fasta scores: E(): 1.1e-45, 69.18% id in 185 aa. Shigella flexneri VpsC protein is involved in virulence protein secretion.
 
   
 0.884
ompN
Similar to Escherichia coli outer membrane protein N precursor OmpN or b1377 SWALL:OMPN_ECOLI (SWALL:P77747) (377 aa) fasta scores: E(): 1.1e-76, 53.86% id in 388 aa.
   
 
 0.860
ECA0296
Similar to Yersinia pestis putative membrane protein ypo3574 SWALL:Q8ZB51 (EMBL:AJ414157) (260 aa) fasta scores: E(): 1.8e-88, 88.84% id in 260 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YrbE SWALL:AAN44700 (EMBL:U18997) (260 aa) fasta scores: E(): 2.7e-84, 85.38% id in 260 aa.
 
   
 0.690
ECA0299
Conserved hypothetical protein; Similar to Yersinia pestis putative anti-sigma B factor antagonist ypo3571 SWALL:Q8ZB54 (EMBL:AJ414157) (100 aa) fasta scores: E(): 3.9e-18, 60.41% id in 96 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein yrbb yrbb or b3191 or sf3231 SWALL:YRBB_ECOLI (SWALL:P45389) (97 aa) fasta scores: E(): 4.6e-11, 40.62% id in 96 aa.
 
   
 0.639
ECA0295
ABC transporter, ATP-binding protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical ABC transporter ATP-binding protein YrbF SWALL:YRBF_ECOLI (SWALL:P45393) (269 aa) fasta scores: E(): 2.1e-73, 77.69% id in 269 aa, and to Yersinia pestis putative ABC transporter ATP-binding protein ypo3575 SWALL:AAM83740 (EMBL:AJ414157) (272 aa) fasta scores: E(): 7.8e-78, 85% id in 260 aa.
 
   
 0.633
bamD
Putative lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. Constitutes, with BamA, the core component of the assembly machinery.
  
  
 0.587
imp
Organic solvent tolerance protein precursor; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
  
 0.566
ECA0405
Putative permease; Similar to Salmonella typhimurium putative permease YjgP SWALL:Q8ZK27 (EMBL:AE008910) (366 aa) fasta scores: E(): 1.1e-107, 73.33% id in 360 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YjgP SWALL:YJGP_ECOLI (SWALL:P39340) (366 aa) fasta scores: E(): 1.3e-106, 73.46% id in 358 aa. YjgP belongs to a family of predicted permeases but there is no experimental evidence of this.
  
   
 0.564
bamB
Putative lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
   
 0.539
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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