STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3084Similar to Salmonella typhi putative membrane protein sty2625 SWALL:Q8Z4Y7 (EMBL:AL627274) (313 aa) fasta scores: E(): 4.1e-76, 65.06% id in 312 aa, and to Escherichia coli O157:H7 putative transport yfdc or z3611 or ecs3230 SWALL:Q8XCN1 (EMBL:AE005466) (310 aa) fasta scores: E(): 8.4e-76, 66% id in 300 aa. (312 aa)    
Predicted Functional Partners:
ECA3327
Putative carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
  
    0.592
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
     
 0.579
ECA2844
Putative membrane protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yqae or b2666 or c3215 or z3965 or ecs3527 SWALL:YQAE_ECOLI (SWALL:P77240) (52 aa) fasta scores: E(): 8.5e-17, 82.69% id in 52 aa, and to Salmonella typhimurium, and Salmonella typhi putative yqae family transport protein yqae or stm2796 or sty2916 SWALL:Q8XF49 (EMBL:AE008827) (52 aa) fasta scores: E(): 6.7e-16, 82.35% id in 51 aa.
  
     0.560
ECA3194
Putative diacylglycerol kinase; Probably phosphorylates lipids; the in vivo substrate is unknown.
 
  
 0.533
ECA2839
Putative diacylglycerol kinase; Similar to Anabaena sp. hypothetical protein Alr2881 SWALL:Q8YT45 (EMBL:AP003591) (315 aa) fasta scores: E(): 1.9e-50, 48.43% id in 287 aa, and to Bacillus halodurans hypothetical protein Bh1953 SWALL:Q9KBH4 (EMBL:AP001513) (295 aa) fasta scores: E(): 2.6e-20, 29.55% id in 291 aa.
  
  
 0.448
ECA0433
Putative lipoprotein; Similar to Pseudomonas aeruginosa hypothetical protein pa2695 SWALL:Q9I0E7 (EMBL:AE004697) (367 aa) fasta scores: E(): 4.9e-93, 67.61% id in 352 aa, and to Escherichia coli hypothetical protein YaiW SWALL:YAIW_ECOLI (SWALL:P77562) (364 aa) fasta scores: E(): 4.5e-89, 66.02% id in 365 aa.
  
     0.438
bfd
Bacterioferritin-associated ferredoxin; Similar to Escherichia coli, and Escherichia coli O6 bacterioferritin-associated ferredoxin Bfd or b3337 or c4108 SWALL:BFD_ECOLI (SWALL:P13655) (64 aa) fasta scores: E(): 4.1e-13, 56.25% id in 64 aa.
 
     0.436
nasB
Similar to Klebsiella pneumoniae nitrite reductase [NAD(P)H] large subunit NasB SWALL:NIRB_KLEPN (SWALL:Q06458) (957 aa) fasta scores: E(): 0, 70.89% id in 962 aa; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
  
 0.423
ECA2466
Putative exported protein; Similar to Salmonella typhimurium putative inner membrane protein stm0381 SWALL:Q8ZRF2 (EMBL:AE008713) (237 aa) fasta scores: E(): 6.8e-42, 50.22% id in 227 aa, and to Pseudomonas putida conserved hypothetical protein pp1511 SWALL:AAN67132 (EMBL:AE016779) (229 aa) fasta scores: E(): 2e-31, 41.55% id in 231 aa.
  
     0.419
nasA
Nitrate reductase; Similar to Klebsiella pneumoniae nitrate reductase NasA SWALL:NASA_KLEPN (SWALL:Q06457) (866 aa) fasta scores: E(): 3.4e-170, 56.46% id in 882 aa, and to Agrobacterium tumefaciens nitrate reductase large subunit NasA or atu3900 or agr_l_1895 SWALL:Q8U930 (EMBL:AE009320) (903 aa) fasta scores: E(): 9e-163, 53.77% id in 887 aa; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
  
 0.418
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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