STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3086Similar to Vibrio cholerae acetyltransferase, putative vca0479 and vca0400 SWALL:Q9K2Q6 (EMBL:AE004379) (151 aa) fasta scores: E(): 0.00011, 27.53% id in 138 aa, and to Ralstonia solanacearum hypothetical protein rsc0120 or rs00990 SWALL:Q8Y361 (EMBL:AL646057) (164 aa) fasta scores: E(): 0.00012, 31.03% id in 145 aa. (149 aa)    
Predicted Functional Partners:
ECA3085
Putative exported protein; Similar to Synechocystis sp. hypothetical protein Slr1025 SWALL:YA25_SYNY3 (SWALL:P73136) (112 aa) fasta scores: E(): 2.2e-12, 45.37% id in 108 aa, and to Streptococcus agalactiae hypothetical protein gbs1656 SWALL:CAD47315 (EMBL:AL766852) (92 aa) fasta scores: E(): 7.9, 29.11% id in 79 aa.
       0.540
ECA1486
Similar to Pseudomonas syringae ATP-binding protein SyrD SWALL:SYRD_PSESY (SWALL:P33951) (566 aa) fasta scores: E(): 1.2e-54, 34.27% id in 566 aa, and to Synechococcus elongatus ABC transporter ATP-binding protein tlr1649 SWALL:BAC09201 (EMBL:AP005374) (542 aa) fasta scores: E(): 6e-69, 39.92% id in 541 aa.
  
     0.507
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.