STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3087Putative exported protein; Similar to Phytophthora parasitica necrosis-inducing protein Npp1 SWALL:Q9AT28 (EMBL:AF352031) (237 aa) fasta scores: E(): 1.9e-07, 31.1% id in 209 aa, and to Vibrio sp. CH-291 hypothetical 29.6 kDa protein SWALL:Q93IK1 (EMBL:AJ314791) (261 aa) fasta scores: E(): 9.1e-59, 55.98% id in 259 aa, and to Fusarium oxysporum f. sp. erythroxyli necrosis and ethylene inducing peptide Nep1 SWALL:O42737 (EMBL:AF036580) (253 aa) fasta scores: E(): 3.4e-06, 27.27% id in 231 aa. (263 aa)    
Predicted Functional Partners:
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
  
   
 0.784
ECA3412
Hypothetical protein; No significant database matches.
  
     0.750
cfa7
Similar to Pseudomonas syringae type I polyketide synthase Cfa7 SWALL:Q9Z3T8 (EMBL:AF098795) (2066 aa) fasta scores: E(): 0, 52.6% id in 2091 aa, and to Streptomyces coelicolor putative type I polyketide synthase sco6275 SWALL:CAD55506 (EMBL:AL939127) (4557 aa) fasta scores: E(): 3e-183, 44.33% id in 1845 aa.
  
   
 0.737
ECA4303
Putative exported protein; Similar to Streptomyces coelicolor hypothetical protein sco1536 or scl2.26C SWALL:Q9L273 (EMBL:AL939109) (822 aa) fasta scores: E(): 4e-150, 48.64% id in 847 aa, and to Bacillus subtilis YetA protein SWALL:O31530 (EMBL:Z99107) (857 aa) fasta scores: E(): 4.1e-50, 34.15% id in 887 aa.
  
     0.667
pelI
Pectate lyase; Similar to Erwinia carotovora pectate lyase PelB SWALL:Q47471 (EMBL:X79232) (347 aa) fasta scores: E(): 1.3e-129, 93.66% id in 347 aa, and to Erwinia carotovora pectate lyase Pel-3 SWALL:Q47465 (EMBL:L32172) (347 aa) fasta scores: E(): 1.6e-128, 92.5% id in 347 aa, and to Erwinia chrysanthemi endo-pectate lyase precursor PelI SWALL:O50325 (EMBL:Y13340) (344 aa) fasta scores: E(): 6e-87, 64.57% id in 350 aa.
  
   
 0.658
ECA2553
Pectate lyase; Similar to Erwinia chrysanthemi pectate lyase L precursor PelL SWALL:PELL_ERWCH (SWALL:Q47473) (425 aa) fasta scores: E(): 9.3e-21, 39.57% id in 422 aa, and to Erwinia chrysanthemi pectate lyase PelL1 SWALL:Q9RP65 (EMBL:AF171228) (425 aa) fasta scores: E(): 2.9e-20, 37.79% id in 418 aa.
  
   
 0.628
ECA3112
Pectate lyase; Similar to Bacillus sp pectate lyase PelK SWALL:BAA05383 (EMBL:D26349) (420 aa) fasta scores: E(): 2.7e-35, 35.16% id in 472 aa, and to Erwinia chrysanthemi pectate lyase a precursor PelA SWALL:PELA_ERWCH (SWALL:P29155) (393 aa) fasta scores: E(): 1.1e-27, 31.9% id in 442 aa.
  
     0.596
ECA2209
Putative oxidoreductase; Similar to Oceanobacillus iheyensis hypothetical conserved protein ob2083 SWALL:BAC14039 (EMBL:AP004600) (426 aa) fasta scores: E(): 1.9e-114, 62.97% id in 424 aa, and to Rhizobium meliloti putative oxidoreductase protein r00123 or smc04129 SWALL:Q92T57 (EMBL:AL591782) (433 aa) fasta scores: E(): 2.9e-46, 41.68% id in 427 aa.
  
  
  0.583
celV
Similar to Erwinia carotovora endoglucanase V precursor CelV SWALL:GUNV_ERWCA (SWALL:Q47096) (505 aa) fasta scores: E(): 9.2e-190, 94.65% id in 505 aa.
  
   
 0.570
ECA2220
Putative cellulase; Similar to Bacillus subtilis YoaJ SWALL:O34918 (EMBL:AF027868) (232 aa) fasta scores: E(): 4.2e-47, 53.61% id in 235 aa, and to the C-terminal region of Clavibacter michiganensis subsp. sepedonicus cellulase cela SWALL:Q9AF65 (EMBL:AY007311) (727 aa) fasta scores: E(): 2.6e-09, 30.52% id in 190 aa.
  
   
 0.570
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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