STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3095Similar to Haemophilus influenzae hypothetical ABC transporter permease protein Hi1471 SWALL:YE71_HAEIN (SWALL:Q57130) (337 aa) fasta scores: E(): 3e-65, 53.86% id in 336 aa, and to Pasteurella multocida hypothetical protein Pm1148 SWALL:Q9CLR3 (EMBL:AE006155) (340 aa) fasta scores: E(): 7.2e-70, 57.44% id in 329 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (339 aa)    
Predicted Functional Partners:
ECA3094
Similar to Haemophilus influenzae hypothetical ABC transporter ATP-binding protein Hi1470 SWALL:YE70_HAEIN (SWALL:Q57399) (253 aa) fasta scores: E(): 9.5e-36, 46.12% id in 245 aa, and to Pasteurella multocida hypothetical protein Pm1147 SWALL:Q9CLR4 (EMBL:AE006155) (246 aa) fasta scores: E(): 1.2e-38, 47.22% id in 252 aa.
 
 
 0.969
ECA3096
Similar to Salmonella typhi possible ABC-transport protein, periplasmic-binding component sty3313 SWALL:Q8Z3R3 (EMBL:AL627277) (350 aa) fasta scores: E(): 6.1e-84, 64.84% id in 347 aa, and to Pasteurella multocida hypothetical protein Pm1149 SWALL:Q9CLR2 (EMBL:AE006155) (350 aa) fasta scores: E(): 3.1e-90, 71.85% id in 334 aa.
 
 
 0.961
hmuV
Hemin transport system ATP-binding protein; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
 
 
 0.914
ECA4254
Putative iron(III) ABC transporter ATP-binding protein; Similar to Escherichia coli ferrichrome transport ATP-binding protein FhuC or b0151 SWALL:FHUC_ECOLI (SWALL:P07821) (265 aa) fasta scores: E(): 1.2e-25, 37.5% id in 256 aa, and to Brucella melitensis iron(III) dicitrate transport ATP-binding protein bmeii0537 SWALL:Q8YCJ1 (EMBL:AE009689) (264 aa) fasta scores: E(): 6e-28, 42.21% id in 244 aa.
 
 
 0.876
ECA3564
Similar to Escherichia coli iron-chelating periplasmic-binding protein SWALL:Q8VR80 (EMBL:AF447814) (332 aa) fasta scores: E(): 7.3e-53, 47.19% id in 303 aa, and to Methanosarcina acetivorans iron ma1222 SWALL:Q8TRF8 (EMBL:AE010789) (365 aa) fasta scores: E(): 1.2e-30, 33.72% id in 338 aa.
 
 
 0.868
hmuT
Similar to Yersinia pestis hemin-binding periplasmic protein HmuT precursor HmuT or ypo0281 or y0541 SWALL:HMUT_YERPE (SWALL:Q56991) (279 aa) fasta scores: E(): 2.7e-57, 60.66% id in 272 aa.
 
 
 0.865
cbrD
Similar to Erwinia chrysanthemi achromobactin transport ATP-binding protein CbrD SWALL:CBRD_ERWCH (SWALL:Q47087) (273 aa) fasta scores: E(): 3.9e-64, 70.75% id in 253 aa.
 
 
 0.852
fhuC
Similar to Escherichia coli ferrichrome transport ATP-binding protein FhuC or b0151 SWALL:FHUC_ECOLI (SWALL:P07821) (265 aa) fasta scores: E(): 7.5e-80, 79.92% id in 264 aa.
 
 
 0.846
btuF
Vitamin B12 transport protein; Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Binds vitamin B12 and delivers it to the periplasmic surface of BtuC.
 
 
 0.838
ECA4255
Similar to Rhizobium loti iron(III) ABC transporter, periplasmic-binding protein mlr8228 SWALL:Q983Q2 (EMBL:AP003013) (315 aa) fasta scores: E(): 8e-77, 62.38% id in 319 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2913 pa2913 SWALL:Q9HZT4 (EMBL:AE004717) (323 aa) fasta scores: E(): 1.3e-50, 45.57% id in 316 aa.
 
 
 0.803
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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