STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
outCSimilar to Erwinia carotovora general secretion pathway protein C OutC SWALL:GSPC_ERWCA (SWALL:P31699) (285 aa) fasta scores: E(): 6.4e-96, 91.63% id in 287 aa, and to Erwinia chrysanthemi general secretion pathway protein C OutC SWALL:GSQC_ERWCH (SWALL:Q01564) (272 aa) fasta scores: E(): 1.5e-49, 52.01% id in 273 aa. (287 aa)    
Predicted Functional Partners:
outD
Similar to Erwinia carotovora general secretion pathway protein D precursor OutD SWALL:GSPD_ERWCA (SWALL:P31701) (650 aa) fasta scores: E(): 3e-215, 92.76% id in 650 aa, and to Klebsiella pneumoniae general secretion pathway protein D precursor PulD SWALL:GSPD_KLEPN (SWALL:P15644) (660 aa) fasta scores: E(): 1.9e-173, 74.31% id in 654 aa.
 
 
 0.984
outI
Similar to Erwinia carotovora general secretion pathway protein I precursor OutI SWALL:GSPI_ERWCA (SWALL:P31588) (121 aa) fasta scores: E(): 1.4e-44, 94.21% id in 121 aa, and to Erwinia chrysanthemi general secretion pathway protein I precursor OutI SWALL:GSPI_ERWCH (SWALL:P24688) (125 aa) fasta scores: E(): 3.3e-27, 59.32% id in 118 aa.
 
  
 0.951
outJ
Similar to Erwinia carotovora general secretion pathway protein J precursor OutJ SWALL:GSPJ_ERWCA (SWALL:P31589) (216 aa) fasta scores: E(): 1e-74, 95.96% id in 198 aa, and to Erwinia chrysanthemi general secretion pathway protein J precursor OutJ SWALL:GSPJ_ERWCH (SWALL:P24689) (206 aa) fasta scores: E(): 3.8e-43, 60.82% id in 194 aa.
 
  
 0.947
outL
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.934
outM
General secretion pathway protein M; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.931
outN
Similar to Erwinia carotovora general secretion pathway protein N OutN SWALL:GSPN_ERWCA (SWALL:P31710) (248 aa) fasta scores: E(): 3e-88, 88.71% id in 248 aa, and to Klebsiella pneumoniae general secretion pathway protein N PulN SWALL:GSPN_KLEPN (SWALL:P15753) (252 aa) fasta scores: E(): 2.5e-26, 35.88% id in 248 aa.
 
   
 0.920
outK
Similar to Erwinia carotovora general secretion pathway protein K OutK SWALL:GSPK_ERWCA (SWALL:P31706) (328 aa) fasta scores: E(): 5.7e-125, 95.12% id in 328 aa, and to Erwinia chrysanthemi general secretion pathway protein K OutK SWALL:GSPK_ERWCH (SWALL:P24690) (354 aa) fasta scores: E(): 8.7e-44, 50.69% id in 359 aa.
 
  
 0.916
outG
Similar to Erwinia carotovora general secretion pathway protein G precursor OutG SWALL:GSPG_ERWCA (SWALL:P31586) (156 aa) fasta scores: E(): 2.3e-51, 97.88% id in 142 aa, and to Erwinia chrysanthemi general secretion pathway protein G precursor OutG SWALL:GSPG_ERWCH (SWALL:P31585) (153 aa) fasta scores: E(): 1.9e-42, 85.07% id in 134 aa.
 
  
 0.915
outH
Similar to Erwinia carotovora general secretion pathway protein H precursor OutH SWALL:GSPH_ERWCA (SWALL:P31587) (188 aa) fasta scores: E(): 1.7e-68, 92.02% id in 188 aa, and to Erwinia chrysanthemi general secretion pathway protein H precursor OutH SWALL:GSPH_ERWCH (SWALL:P24687) (181 aa) fasta scores: E(): 7.3e-32, 52.24% id in 178 aa.
 
  
 0.900
hrcC
Type III secretion protein; Similar to Pectobacterium carotovorum subsp. carotovorum HrcC SWALL:Q93FZ1 (EMBL:AF302656) (689 aa) fasta scores: E(): 0, 95.78% id in 688 aa, and to Erwinia amylovora HrcC precursor SWALL:Q46625 (EMBL:U56662) (676 aa) fasta scores: E(): 1.3e-169, 68.65% id in 654 aa.
  
 
 0.867
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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