Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
pehXSimilar to Erwinia chrysanthemi exo-poly-alpha-D-galacturonosidase precursor PehX SWALL:PEHX_ERWCH (SWALL:P15922) (602 aa) fasta scores: E(): 1e-59, 48.5% id in 635 aa, and to Klebsiella oxytoca polygalacturonase PehX SWALL:Q8VP71 (EMBL:AY065648) (658 aa) fasta scores: E(): 2.7e-155, 60.63% id in 658 aa; Belongs to the glycosyl hydrolase 28 family. (659 aa)    
Predicted Functional Partners:
pemA
Similar to Erwinia chrysanthemi pectinesterase a precursor PemA or Pem SWALL:PMEA_ERWCH (SWALL:P07863) (366 aa) fasta scores: E(): 3.5e-98, 70.47% id in 359 aa.
 
  
 0.912
pelX
Similar to Erwinia chrysanthemi exopolygalacturonate lyase PelX SWALL:Q9Z5P8 (EMBL:Y16797) (734 aa) fasta scores: E(): 1.9e-206, 73.8% id in 733 aa, and to Erwinia chrysanthemi pectate disaccharide-lyase precursor PelX SWALL:PELX_ERWCH (SWALL:P22751) (749 aa) fasta scores: E(): 2.8e-195, 74.16% id in 689 aa.
 
  
 0.831
paeY
Similar to Erwinia chrysanthemi pectin acetylesterase PaeY SWALL:O32563 (EMBL:Y09828) (551 aa) fasta scores: E(): 8.8e-135, 61.07% id in 542 aa.
 
 0.825
pelZ
Pectate lyase; Similar to Erwinia chrysanthemi pectate lyase precursor PelZ SWALL:P94773 (EMBL:X97119) (420 aa) fasta scores: E(): 5.1e-120, 72.53% id in 426 aa.
 
  
 0.722
pmeB
Similar to Erwinia chrysanthemi pectinesterase B precursor PemB SWALL:PMEB_ERWCH (SWALL:Q47474) (433 aa) fasta scores: E(): 8.6e-100, 65.48% id in 394 aa, and to Erwinia carotovora pectinesterase b pemB SWALL:PMEB_ERWCA (SWALL:P55743) (178 aa) fasta scores: E(): 7.6e-61, 91.47% id in 176 aa.
 
  
 0.711
uxaC
Uronate isomerase; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri uronate isomerase UxaC or b3092 or c3850 or sf3132 SWALL:UXAC_ECOLI (SWALL:P42607) (470 aa) fasta scores: E(): 8.6e-183, 89.33% id in 469 aa.
 
  
 0.708
ECA3112
Pectate lyase; Similar to Bacillus sp pectate lyase PelK SWALL:BAA05383 (EMBL:D26349) (420 aa) fasta scores: E(): 2.7e-35, 35.16% id in 472 aa, and to Erwinia chrysanthemi pectate lyase a precursor PelA SWALL:PELA_ERWCH (SWALL:P29155) (393 aa) fasta scores: E(): 1.1e-27, 31.9% id in 442 aa.
 
  
 0.703
kduI1
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.679
kduI2
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.678
pnl
Pectin lyase; Previously sequenced as Erwinia carotovora pectin lyase Pnl SWALL:PLYD_ERWCA (SWALL:P24112) (314 aa) fasta scores: E(): 5.8e-119, 94.58% id in 314 aa.
 
  
 0.668
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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