STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3112Pectate lyase; Similar to Bacillus sp pectate lyase PelK SWALL:BAA05383 (EMBL:D26349) (420 aa) fasta scores: E(): 2.7e-35, 35.16% id in 472 aa, and to Erwinia chrysanthemi pectate lyase a precursor PelA SWALL:PELA_ERWCH (SWALL:P29155) (393 aa) fasta scores: E(): 1.1e-27, 31.9% id in 442 aa. (522 aa)    
Predicted Functional Partners:
pemA
Similar to Erwinia chrysanthemi pectinesterase a precursor PemA or Pem SWALL:PMEA_ERWCH (SWALL:P07863) (366 aa) fasta scores: E(): 3.5e-98, 70.47% id in 359 aa.
  
 0.981
pelX
Similar to Erwinia chrysanthemi exopolygalacturonate lyase PelX SWALL:Q9Z5P8 (EMBL:Y16797) (734 aa) fasta scores: E(): 1.9e-206, 73.8% id in 733 aa, and to Erwinia chrysanthemi pectate disaccharide-lyase precursor PelX SWALL:PELX_ERWCH (SWALL:P22751) (749 aa) fasta scores: E(): 2.8e-195, 74.16% id in 689 aa.
 
  
 0.958
pelB
Pectate lyase II; Involved in maceration and soft-rotting of plant tissue.
  
  
 
0.930
pelC
Pectate lyase III; Involved in maceration and soft-rotting of plant tissue.
  
  
 
0.930
pelA
Pectate lyase I; Involved in maceration and soft-rotting of plant tissue.
  
  
 
0.929
pehA
Endo-polygalacturonase; Similar to Erwinia carotovora endo-polygalacturonase precursor PehA SWALL:PGL2_ERWCA (SWALL:P26509) (402 aa) fasta scores: E(): 1.4e-143, 97.76% id in 402 aa, and to Erwinia carotovora Peh precursor SWALL:Q9S5V7 (EMBL:AB022681) (402 aa) fasta scores: E(): 1.3e-140, 95.77% id in 402 aa; Belongs to the glycosyl hydrolase 28 family.
 
  
 0.926
ECA2135
Similar to Erwinia carotovora periplasmic pectate lyase precursor PelB SWALL:PELP_ERWCA (SWALL:P14005) (568 aa) fasta scores: E(): 0, 97% id in 568 aa, and to Erwinia carotovora pectatelyase SWALL:Q47466 (EMBL:J03673) (568 aa) fasta scores: E(): 0, 96.3% id in 568 aa. Also similar to ECA2402 (PelB) (37.782% id 532 aa overlap).
     
  0.900
pelW
Similar to Erwinia chrysanthemi pectate disaccharide-lyase PelW or KdgC SWALL:PELW_ERWCH (SWALL:Q05526) (553 aa) fasta scores: E(): 1.8e-175, 73.97% id in 538 aa. Also similar to ECA2135 (PelB) (37.782% id 532 aa overlap).
     
  0.900
ogl
Oligogalacturonate lyase; Involved in degradation of pectin, which causes soft-rod disease in plants.
    
  0.900
hrpW
Type III effector protein; Similar to Erwinia amylovora HrpW protein SWALL:O54508 (EMBL:Y13831) (447 aa) fasta scores: E(): 2.7e-36, 50.67% id in 448 aa, and to Pseudomonas syringae pv. maculicola type III effector hrpwpma SWALL:Q8RP12 (EMBL:AF458044) (424 aa) fasta scores: E(): 4.4e-28, 42.12% id in 470 aa.
  
   
 0.710
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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