STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3118Putative mechanosensitive ion channel protein; Similar to Pseudomonas putida membrane protein, putative pp0707 SWALL:AAN66332 (EMBL:AE016776) (855 aa) fasta scores: E(): 7.4e-106, 43.1% id in 798 aa, and to Xanthomonas campestris hypothetical protein Xcc0402 SWALL:Q8PDD8 (EMBL:AE012136) (821 aa) fasta scores: E(): 4e-50, 30.14% id in 806 aa, and to Erwinia chrysanthemi BspA protein precursor BspA SWALL:Q9EV03 (EMBL:AJ251781) (1106 aa) fasta scores: E(): 1.5e-22, 22.75% id in 813 aa. (815 aa)    
Predicted Functional Partners:
trkA
Potassium uptake protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri Trk system potassium uptake protein TrkA or b3290 or c4050 or z4660 or ecs4155 or sf3321 SWALL:TRKA_ECOLI (SWALL:P23868) (458 aa) fasta scores: E(): 3.2e-140, 85.37% id in 458 aa.
      
 0.478
marC
Similar to Escherichia coli, and Shigella flexneri multiple antibiotic resistance protein MarC or b1529 or sf1565 SWALL:MARC_ECOLI (SWALL:P31123) (221 aa) fasta scores: E(): 9.6e-59, 71.42% id in 224 aa.
  
    0.473
ECA4157
Similar to Yersinia pestis putative membrane protein ypo3950 or y3879 SWALL:Q8ZA68 (EMBL:AJ414159) (194 aa) fasta scores: E(): 7.1e-61, 85.56% id in 194 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yhgn or b3434 or z4798 or ecs4279 or sf3457 SWALL:YHGN_ECOLI (SWALL:P46851) (197 aa) fasta scores: E(): 2.6e-59, 78.06% id in 196 aa.
  
    0.473
mscL
Large-conductance mechanosensitive channel; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.
      
 0.402
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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