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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3124Similar to Salmonella typhi hypothetical protein Sty3182 SWALL:Q8Z3Y7 (EMBL:AL627277) (132 aa) fasta scores: E(): 5.7e-05, 57.5% id in 40 aa, and to Shigella flexneri, and Shigella flexneri 2a putative stborf2 stborf2 or mvpA SWALL:O06662 (EMBL:U82621) (132 aa) fasta scores: E(): 0.00041, 55% id in 40 aa. (54 aa)    
Predicted Functional Partners:
ECA3125
Similar to Agrobacterium tumefaciens hypothetical protein atu3824 or agr_l_2017 SWALL:Q8U9A4 (EMBL:AE009313) (327 aa) fasta scores: E(): 1.1e-98, 76.14% id in 327 aa, and to Vibrio vulnificus conserved hypothetical protein vv20997 SWALL:AAO07909 (EMBL:AE016811) (366 aa) fasta scores: E(): 5.4e-97, 75.61% id in 324 aa.
       0.468
ECA3123
Putative membrane protein; No significant database matches.
       0.447
metE-2
5-methyltetrahydropteroyltriglutamate- homocysteine methyltransferase; Similar to Pseudomonas putida MetE SWALL:Q9AF89 (EMBL:AF363277) (361 aa) fasta scores: E(): 1.6e-114, 82.94% id in 340 aa, and to Agrobacterium tumefaciens 5-methyltetrahydropteroyltriglutamate- homocysteine methyltransferase MetE or atu3823 or agr_l_2018 SWALL:Q8U9A5 (EMBL:AE009313) (342 aa) fasta scores: E(): 3.4e-124, 90.29% id in 340 aa.
       0.420
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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