STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3125Similar to Agrobacterium tumefaciens hypothetical protein atu3824 or agr_l_2017 SWALL:Q8U9A4 (EMBL:AE009313) (327 aa) fasta scores: E(): 1.1e-98, 76.14% id in 327 aa, and to Vibrio vulnificus conserved hypothetical protein vv20997 SWALL:AAO07909 (EMBL:AE016811) (366 aa) fasta scores: E(): 5.4e-97, 75.61% id in 324 aa. (325 aa)    
Predicted Functional Partners:
metE-2
5-methyltetrahydropteroyltriglutamate- homocysteine methyltransferase; Similar to Pseudomonas putida MetE SWALL:Q9AF89 (EMBL:AF363277) (361 aa) fasta scores: E(): 1.6e-114, 82.94% id in 340 aa, and to Agrobacterium tumefaciens 5-methyltetrahydropteroyltriglutamate- homocysteine methyltransferase MetE or atu3823 or agr_l_2018 SWALL:Q8U9A5 (EMBL:AE009313) (342 aa) fasta scores: E(): 3.4e-124, 90.29% id in 340 aa.
 
    0.936
ECA3124
Similar to Salmonella typhi hypothetical protein Sty3182 SWALL:Q8Z3Y7 (EMBL:AL627277) (132 aa) fasta scores: E(): 5.7e-05, 57.5% id in 40 aa, and to Shigella flexneri, and Shigella flexneri 2a putative stborf2 stborf2 or mvpA SWALL:O06662 (EMBL:U82621) (132 aa) fasta scores: E(): 0.00041, 55% id in 40 aa.
       0.468
hpaC
Similar to Escherichia coli 4-hydroxyphenylacetate 3-monooxygenase, reductase component HpaC SWALL:HPAC_ECOLI (SWALL:Q57501) (170 aa) fasta scores: E(): 1.8e-19, 41.66% id in 156 aa, and to Escherichia coli putative flavin:NADH reductase ycdh or b1007 SWALL:YCDH_ECOLI (SWALL:P75893) (164 aa) fasta scores: E(): 5e-35, 60.37% id in 159 aa; EC number 1.6.8.-.
 
   
 0.451
pucG
Similar to Bacillus subtilis purine catabolism protein PucG SWALL:PUCG_BACSU (SWALL:O32148) (416 aa) fasta scores: E(): 1.9e-78, 52.73% id in 402 aa, and to Xanthomonas campestris serine-pyruvate aminotransferase xcc0283 SWALL:Q8PDQ2 (EMBL:AE012124) (418 aa) fasta scores: E(): 2.2e-93, 59.7% id in 407 aa.
  
     0.426
ECA1930
Similar to Yersinia pestis hypothetical protein Ypo2376 SWALL:Q8ZE14 (EMBL:AJ414152) (121 aa) fasta scores: E(): 8.5e-22, 58.76% id in 97 aa, and to Escherichia coli O157:H7 orf, hypothetical protein z2665 or ecs2358 SWALL:Q8X634 (EMBL:AE005388) (125 aa) fasta scores: E(): 1.4e-19, 53.84% id in 104 aa.
  
     0.408
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.