STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dltASimilar to Staphylococcus aureus D-alanine--poly(phosphoribitol) ligase subunit 1 DltA or mw0814 SWALL:DLTA_STAAW (SWALL:Q9S673) (485 aa) fasta scores: E(): 1.8e-42, 37.15% id in 471 aa, and to Lactococcus lactis D-alanine--poly(phosphoribitol) ligase subunit 1 DltA or ll1261 SWALL:DLTA_LACLA (SWALL:Q9CG49) (499 aa) fasta scores: E(): 1.3e-37, 32.03% id in 487 aa. (477 aa)    
Predicted Functional Partners:
dltB
Peptidoglycan biosynthesis protein; Similar to Bacillus subtilis protein DltB or ipa-4R SWALL:DLTB_BACSU (SWALL:P39580) (395 aa) fasta scores: E(): 3.9e-24, 31% id in 400 aa, and to Staphylococcus epidermidis DltB membrane protein se0625 SWALL:AAO04222 (EMBL:AE016746) (404 aa) fasta scores: E(): 1.1e-23, 28.9% id in 346 aa; Belongs to the membrane-bound acyltransferase family.
 
 
 0.998
ECA3127
Similar to Bos taurus acyl carrier protein, mitochondrial ndufab1 SWALL:ACPM_BOVIN (SWALL:P52505) (88 aa) fasta scores: E(): 0.18, 27.94% id in 68 aa, and to Fusobacterium nucleatum acyl carrier protein acpp or fn0150 SWALL:ACP_FUSNN (SWALL:Q8RGX5) (75 aa) fasta scores: E(): 1.9, 30.66% id in 75 aa.
  
 
  0.987
dltD
Poly(glycerophosphate chain) D-alanine transfer protein; Similar to Staphylococcus aureus, and Staphylococcus aureus putative exoprotein DltD or mw0817 SWALL:Q9S674 (EMBL:AF101234) (391 aa) fasta scores: E(): 0.028, 20.97% id in 391 aa, and to Staphylococcus aureus poly(glycerophosphate chain) D-alanine transfer protein DltD or sav0935 or sa0796 SWALL:Q99VE6 (EMBL:AP003360) (391 aa) fasta scores: E(): 0.028, 20.97% id in 391 aa.
  
 
 0.982
dat-2
Similar to Staphylococcus haemolyticus D-alanine aminotransferase Dat SWALL:DAAA_STAHA (SWALL:P54694) (282 aa) fasta scores: E(): 4.8e-36, 38.57% id in 280 aa, and to Agrobacterium tumefaciens D-alanine aminotransferase Dat or atu5473 or agr_pat_698 SWALL:Q8UJK4 (EMBL:AE008968) (290 aa) fasta scores: E(): 6.7e-61, 55.39% id in 278 aa.
   
  0.946
alr
Alanine racemase, biosynthetic; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
     
 0.945
entB
Enterobactin synthetase component B (isochorismatase); Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri isochorismatase EntB or EntG or b0595 or z0737 or ecs0634 or sf0509 SWALL:ENTB_ECOLI (SWALL:P15048) (285 aa) fasta scores: E(): 1.1e-69, 63.63% id in 286 aa.
 
 0.925
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
 
 
 0.924
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
 0.908
cfa7
Similar to Pseudomonas syringae type I polyketide synthase Cfa7 SWALL:Q9Z3T8 (EMBL:AF098795) (2066 aa) fasta scores: E(): 0, 52.6% id in 2091 aa, and to Streptomyces coelicolor putative type I polyketide synthase sco6275 SWALL:CAD55506 (EMBL:AL939127) (4557 aa) fasta scores: E(): 3e-183, 44.33% id in 1845 aa.
 
 0.905
ddlB
D-alanine--D-alanine ligase B; Cell wall formation.
     
 0.883
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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