STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dltBPeptidoglycan biosynthesis protein; Similar to Bacillus subtilis protein DltB or ipa-4R SWALL:DLTB_BACSU (SWALL:P39580) (395 aa) fasta scores: E(): 3.9e-24, 31% id in 400 aa, and to Staphylococcus epidermidis DltB membrane protein se0625 SWALL:AAO04222 (EMBL:AE016746) (404 aa) fasta scores: E(): 1.1e-23, 28.9% id in 346 aa; Belongs to the membrane-bound acyltransferase family. (372 aa)    
Predicted Functional Partners:
dltD
Poly(glycerophosphate chain) D-alanine transfer protein; Similar to Staphylococcus aureus, and Staphylococcus aureus putative exoprotein DltD or mw0817 SWALL:Q9S674 (EMBL:AF101234) (391 aa) fasta scores: E(): 0.028, 20.97% id in 391 aa, and to Staphylococcus aureus poly(glycerophosphate chain) D-alanine transfer protein DltD or sav0935 or sa0796 SWALL:Q99VE6 (EMBL:AP003360) (391 aa) fasta scores: E(): 0.028, 20.97% id in 391 aa.
  
 
 0.996
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
 
 
 0.975
dltA
Similar to Staphylococcus aureus D-alanine--poly(phosphoribitol) ligase subunit 1 DltA or mw0814 SWALL:DLTA_STAAW (SWALL:Q9S673) (485 aa) fasta scores: E(): 1.8e-42, 37.15% id in 471 aa, and to Lactococcus lactis D-alanine--poly(phosphoribitol) ligase subunit 1 DltA or ll1261 SWALL:DLTA_LACLA (SWALL:Q9CG49) (499 aa) fasta scores: E(): 1.3e-37, 32.03% id in 487 aa.
 
  
 0.975
ECA3127
Similar to Bos taurus acyl carrier protein, mitochondrial ndufab1 SWALL:ACPM_BOVIN (SWALL:P52505) (88 aa) fasta scores: E(): 0.18, 27.94% id in 68 aa, and to Fusobacterium nucleatum acyl carrier protein acpp or fn0150 SWALL:ACP_FUSNN (SWALL:Q8RGX5) (75 aa) fasta scores: E(): 1.9, 30.66% id in 75 aa.
  
 
 0.930
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
  
 
 0.794
ECA2694
Putative polyketide synthetase; Similar to Amycolatopsis mediterranei peptide synthetase BpsD SWALL:Q939Y2 (EMBL:Y16952) (581 aa) fasta scores: E(): 2e-44, 32.34% id in 575 aa, and to Myxococcus xanthus Ta1 SWALL:Q9Z5F4 (EMBL:AJ006977) (2393 aa) fasta scores: E(): 4e-51, 32.97% id in 552 aa.
 
  
 0.770
ECA0483
Similar to Tolypothrix sp. PCC 7601/1 peptide synthetase TpsA SWALL:Q93IL7 (EMBL:AJ318786) (930 aa) fasta scores: E(): 4.5e-41, 30.3% id in 561 aa, and to Pseudomonas syringae syringomycin biosynthesis enzyme 1 SyrB1 SWALL:Q52400 (EMBL:U25130) (614 aa) fasta scores: E(): 1e-40, 32.3% id in 517 aa; Belongs to the ATP-dependent AMP-binding enzyme family.
 
  
 0.734
cfa1
Similar to Pseudomonas syringae cfa-acyl carrier protein Cfa1 SWALL:P72237 (EMBL:U56980) (83 aa) fasta scores: E(): 6.8e-17, 60% id in 80 aa.
  
 
 0.727
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.727
ECA4503
Similar to Escherichia coli O157:H7 putative acyl carrier protein z4854 or ecs4329 SWALL:Q8X6N3 (EMBL:AE005571) (83 aa) fasta scores: E(): 1.1e-18, 70.73% id in 82 aa, and to Vibrio vulnificus acyl carrier protein vv10048 SWALL:AAO08590 (EMBL:AE016797) (84 aa) fasta scores: E(): 1.9e-14, 56.79% id in 81 aa.
  
 
 0.727
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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