Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA3135Similar to Xanthomonas axonopodis hypothetical protein Xac2840 SWALL:Q8PIQ5 (EMBL:AE011925) (130 aa) fasta scores: E(): 5.5e-34, 69.29% id in 127 aa, and to Bradyrhizobium japonicum Bll4598 protein bll4598 SWALL:BAC49863 (EMBL:AP005951) (203 aa) fasta scores: E(): 5.9e-33, 66.41% id in 131 aa. (133 aa)    
Predicted Functional Partners:
ECA2231
Similar to Escherichia coli O6 hypothetical protein ycjy c1801 SWALL:Q8FHQ8 (EMBL:AE016760) (310 aa) fasta scores: E(): 3.8e-49, 47.11% id in 295 aa, and to Vibrio parahaemolyticus hypothetical protein vp1677 SWALL:BAC59940 (EMBL:AP005078) (339 aa) fasta scores: E(): 1.9e-45, 46.23% id in 292 aa.
 
    0.707
ECA3134
Similar to Yersinia pestis putative lysr-family transcriptional regulatory protein ptxr or ypo2807 or y1123 SWALL:Q8ZCZ5 (EMBL:AJ414153) (297 aa) fasta scores: E(): 4.2e-79, 68.47% id in 295 aa, and to Escherichia coli O6 hypothetical transcriptional regulator ycjz c0412 SWALL:Q8FKK6 (EMBL:AE016756) (322 aa) fasta scores: E(): 6.1e-77, 66.44% id in 295 aa.
 
    0.655
ECA2232
Similar to Bradyrhizobium japonicum transcriptional regulatory protein blr5548 SWALL:BAC50813 (EMBL:AP005955) (297 aa) fasta scores: E(): 1.5e-69, 61.01% id in 295 aa, and to Ralstonia solanacearum probable transcription regulator protein rsp1471 or rs03073 SWALL:Q8XQ15 (EMBL:AL646085) (297 aa) fasta scores: E(): 2.1e-64, 57.14% id in 294 aa; Belongs to the LysR transcriptional regulatory family.
  
    0.474
cobB
Putative cobalamin biosynthesis/propionate catabolism protein; Similar to Salmonella typhimurium, and Salmonella typhi CobB protein CobB or stm1221 or sty1261 SWALL:COBB_SALTY (SWALL:P97013) (273 aa) fasta scores: E(): 1.4e-80, 74.81% id in 270 aa, and to Escherichia coli CobB protein CobB or b1120 SWALL:COBB_ECOLI (SWALL:P75960) (279 aa) fasta scores: E(): 3.9e-80, 74.44% id in 270 aa; Belongs to the sirtuin family. Class III subfamily.
  
    0.425
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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