Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
sdaCSerine transporter; Similar to Escherichia coli, and Escherichia coli O157:H7 serine transporter SdaC or DcrA or b2796 or z4113 or ecs3656 SWALL:SDAC_ECOLI (SWALL:P36559) (429 aa) fasta scores: E(): 8.6e-133, 78.68% id in 427 aa. (429 aa)    
Predicted Functional Partners:
dps
DNA protection during starvation protein; During stationary phase, binds the chromosome non- specifically, forming a highly ordered and stable dps-DNA co-crystal within which chromosomal DNA is condensed and protected from diverse damages. It protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral, which can be released after reduction. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction.
    
   0.758
sdaB
L-serine dehydratase 2; Similar to Escherichia coli L-serine dehydratase 2 SdaB or b2797 SWALL:SDHM_ECOLI (SWALL:P30744) (455 aa) fasta scores: E(): 2.1e-132, 71.2% id in 455 aa. Also similar to ECA2380 (SdaA) (75.165% id. in 455 aa overlap); Belongs to the iron-sulfur dependent L-serine dehydratase family.
  
  
 0.733
ECA2021
Similar to Yersinia pestis sulfate transporter y2285 SWALL:Q8D0E3 (EMBL:AE013831) (565 aa) fasta scores: E(): 3.6e-172, 80.56% id in 561 aa, and to Escherichia coli, and Escherichia coli O157:H7 putative sulfate transporter ychm or b1206 or z1977 or ecs1711 SWALL:YCHM_ECOLI (SWALL:P40877) (550 aa) fasta scores: E(): 1.4e-156, 76.61% id in 543 aa.
   
  
 0.507
ECA2958
Putative sulfate transporter; Similar to Corynebacterium efficiens putative transport protein ce2200 SWALL:BAC19010 (EMBL:AP005221) (555 aa) fasta scores: E(): 1e-89, 51.49% id in 503 aa, and to Micrococcus sp. 28 putative integral membrane transporter SWALL:Q8VPP9 (EMBL:AY034092) (515 aa) fasta scores: E(): 2.1e-94, 51.19% id in 502 aa.
   
  
 0.507
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
   
  
 0.469
ECA2168
Similar to Listeria monocytogenes hypothetical protein Lmo0406 SWALL:Q8Y9W3 (EMBL:AL591975) (126 aa) fasta scores: E(): 3e-16, 43.3% id in 127 aa, and to Bacillus subtilis hypothetical protein YyaH SWALL:YYAH_BACSU (SWALL:P37516) (126 aa) fasta scores: E(): 8.2e-14, 36.22% id in 127 aa.
  
   
 0.425
sdaA
L-serine dehydratase 1; Similar to Escherichia coli L-serine dehydratase 1 SdaA or b1814 SWALL:SDHL_ECOLI (SWALL:P16095) (454 aa) fasta scores: E(): 5.1e-154, 83.92% id in 454 aa. Also similar to ECA3159 (SdaB) (75.165% id. in 455 aa overlap); Belongs to the iron-sulfur dependent L-serine dehydratase family.
  
  
 0.401
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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