STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3191Similar to Pseudomonas putida acetyltransferase, GnaT family pp0820 SWALL:AAN66445 (EMBL:AE016777) (187 aa) fasta scores: E(): 1.9e-31, 48.57% id in 175 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1472 SWALL:Q9I3P0 (EMBL:AE004576) (184 aa) fasta scores: E(): 3.5e-39, 61.76% id in 170 aa. (183 aa)    
Predicted Functional Partners:
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
    
  0.950
sat
Similar to Yersinia enterocolitica streptogramin A acetyl transferase Sat SWALL:AAN77593 (EMBL:AF170730) (221 aa) fasta scores: E(): 3.9e-63, 72.72% id in 209 aa, and to Staphylococcus aureus Vat B vat B SWALL:Q57156 (EMBL:U19459) (212 aa) fasta scores: E(): 1.4e-51, 57.76% id in 206 aa.
 
   
 0.671
gltB
Similar to Escherichia coli glutamate synthase [NADPH] large chain precursor GltB or AspB SWALL:GLTB_ECOLI (SWALL:P09831) (1517 aa) fasta scores: E(): 0, 86.75% id in 1495 aa, and to Yersinia pestis glutamate synthase, large subunit GltB SWALL:AAM83722 (EMBL:AE013613) (1535 aa) fasta scores: E(): 0, 90.25% id in 1498 aa.
   
 
 0.612
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
  
 
 0.572
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.556
baeR
Two-component system response regulator; Similar to Escherichia coli, and Escherichia coli O6 transcriptional regulatory protein BaeR baer or b2079 or c2605 SWALL:BAER_ECOLI (SWALL:P30846) (240 aa) fasta scores: E(): 5.7e-63, 73.12% id in 227 aa.
       0.553
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.521
mdtD
Similar to Escherichia coli putative drug transporter MdtD SWALL:BAC06610 (EMBL:AB089190) (471 aa) fasta scores: E(): 6.9e-129, 74.02% id in 462 aa, and to Yersinia pestis putative membrane protein yegb or ypo2850 or y1383 SWALL:Q8ZCV8 (EMBL:AJ414154) (465 aa) fasta scores: E(): 1.2e-127, 73.92% id in 464 aa.
       0.479
baeS
Two-component system sensor kinase; Similar to Escherichia coli sensor protein BaeS or b2078 SWALL:BAES_ECOLI (SWALL:P30847) (467 aa) fasta scores: E(): 3.1e-113, 65.06% id in 458 aa.
     
 0.479
ECA0956
Putative acetyltransferase; Similar to Salmonella typhimurium YceA protein SWALL:Q8L251 (EMBL:AP005147) (178 aa) fasta scores: E(): 5.6e-45, 60.81% id in 171 aa, and to Agrobacterium tumefaciens acetyltransferase atu0874 or agr_c_1598 SWALL:Q8UH11 (EMBL:AE009053) (206 aa) fasta scores: E(): 1.4e-34, 50.87% id in 171 aa.
 
 
 0.475
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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