STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3192Similar to Vibrio cholerae hypothetical protein Vc1096 SWALL:Q9KT09 (EMBL:AE004190) (315 aa) fasta scores: E(): 4.6e-66, 53.58% id in 321 aa, and to Pseudomonas putida glutathione s-transferase domain protein pp3998 SWALL:AAN69592 (EMBL:AE016788) (325 aa) fasta scores: E(): 6.4e-66, 54.95% id in 313 aa. (319 aa)    
Predicted Functional Partners:
ECA3191
Similar to Pseudomonas putida acetyltransferase, GnaT family pp0820 SWALL:AAN66445 (EMBL:AE016777) (187 aa) fasta scores: E(): 1.9e-31, 48.57% id in 175 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1472 SWALL:Q9I3P0 (EMBL:AE004576) (184 aa) fasta scores: E(): 3.5e-39, 61.76% id in 170 aa.
       0.461
ECA3193
Putative protease; Similar to Yersinia pestis putative protease ypo2855 or y1379 SWALL:Q8ZCV5 (EMBL:AJ414154) (464 aa) fasta scores: E(): 9.6e-156, 84.92% id in 451 aa, and to Salmonella typhimurium, and Salmonella typhi putative protease yegq or stm2136 or sty2365 SWALL:Q8XFD2 (EMBL:AE008795) (453 aa) fasta scores: E(): 1.8e-153, 83.48% id in 454 aa.
       0.446
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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