STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3200Putative exported protein; Similar to Listeria innocua hypothetical protein Lin1094 SWALL:Q92CS7 (EMBL:AL596167) (340 aa) fasta scores: E(): 1.5e-25, 30.51% id in 308 aa, and to Streptomyces coelicolor hypothetical protein sco3599 or sc66t3.10C SWALL:Q9XAK3 (EMBL:AL939117) (318 aa) fasta scores: E(): 2e-09, 30.41% id in 263 aa. (350 aa)    
Predicted Functional Partners:
ECA3201
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsp0190 or rs04702 SWALL:Q8XTC3 (EMBL:AL646077) (263 aa) fasta scores: E(): 1.9e-51, 58.87% id in 248 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2847 SWALL:Q9HZZ6 (EMBL:AE004711) (249 aa) fasta scores: E(): 1.7e-40, 46.69% id in 242 aa.
       0.634
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.