STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3205Putative exported choloylglycine hydrolase; Similar to Bacillus sphaericus penicillin acylase SWALL:PAC_BACSH (SWALL:P12256) (338 aa) fasta scores: E(): 2.3e-07, 25.4% id in 307 aa, and to Agrobacterium tumefaciens choloylglycine hydrolase family protein atu4586 or agr_l_573 SWALL:Q8U768 (EMBL:AE009386) (355 aa) fasta scores: E(): 6.1e-56, 60.49% id in 367 aa, and to Clostridium perfringens choloylglycine hydrolase cbh or cpe0709 SWALL:CBH_CLOPE (SWALL:P54965) (329 aa) fasta scores: E(): 2.1e-05, 25.07% id in 315 aa. (376 aa)    
Predicted Functional Partners:
ECA2383
Putative isochorismatase; Similar to Pseudomonas aeruginosa probable hydrolase pa1202 SWALL:Q9I4D6 (EMBL:AE004550) (205 aa) fasta scores: E(): 3.9e-25, 41.17% id in 204 aa, and to Pseudomonas syringae isochorismatase family protein pspto1009 SWALL:AAO54542 (EMBL:AE016859) (208 aa) fasta scores: E(): 5.3e-24, 38.91% id in 203 aa.
  
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Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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