STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3206Transcriptional regulator; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri sugar fermentation stimulation protein B SfsB or Nlp or Sfs7 or b3188 or c3946 or z4551 or ecs4067 or sf3228 SWALL:SFSB_ECOLI (SWALL:P18837) (92 aa) fasta scores: E(): 3.1e-15, 71.21% id in 66 aa. Also similar to ECA0513 (91.139% id. in 79 aa overlap), and to ECA0966 (85.714% id. in 70 aa overlap), and to ECA0686 (76.119% id. in 67 aa overlap.). (71 aa)    
Predicted Functional Partners:
ECA3700
Similar to Neisseria meningitidis hypothetical protein nma1871 or rth11 SWALL:Q9JRE4 (EMBL:AL162757) (203 aa) fasta scores: E(): 7e-29, 41% id in 200 aa, and to Shewanella oneidensis conserved hypothetical protein so0648 SWALL:AAN53726 (EMBL:AE015511) (208 aa) fasta scores: E(): 1.5e-21, 33.84% id in 195 aa.
 
    0.693
ECA2203
Similar to Yersinia pestis putative exported protein ypo2305 or y2136 SWALL:Q8ZE77 (EMBL:AJ414151) (317 aa) fasta scores: E(): 2.4e-78, 69.9% id in 319 aa, and to Shigella flexneri orf, conserved hypothetical protein sf1625 SWALL:AAN43208 (EMBL:AE015183) (314 aa) fasta scores: E(): 8.2e-74, 67.82% id in 317 aa.
  
     0.684
ECA2004
Putative lipoprotein; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein ynbe or b1382 or c1829 or sf1816 SWALL:YNBE_ECOLI (SWALL:P76075) (61 aa) fasta scores: E(): 2.7e-10, 73.21% id in 56 aa, and to Salmonella typhimurium, and Salmonella typhi putative outer membrane lipoprotein ynbe or stm1645 or sty1424 SWALL:Q8XEM6 (EMBL:AE008772) (63 aa) fasta scores: E(): 1.5e-09, 60.65% id in 61 aa.
  
     0.612
ECA3696
Similar to Bacteriophage Mu protein gemA SWALL:VG16_BPMU (SWALL:Q38494) (183 aa) fasta scores: E(): 1.3e-16, 43.66% id in 142 aa, and to Salmonella typhi hypothetical protein Sty1592 sty1592 SWALL:Q8Z6X2 (EMBL:AL627270) (150 aa) fasta scores: E(): 2.8e-32, 64.44% id in 135 aa.
 
     0.559
ECA2693
Similar to Yersinia pestis hypothetical protein Ypo3467 SWALL:Q8ZBE9 (EMBL:AJ414157) (147 aa) fasta scores: E(): 3.7e-20, 39.71% id in 141 aa, and to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein yhbp or stm3270 or sty3453 SWALL:Q8XEW3 (EMBL:AE008850) (147 aa) fasta scores: E(): 4.1e-14, 28.96% id in 145 aa.
  
     0.510
ECA3719
Putative phage-related protein; Similar to Bacteriophage Mu protein gp28 28 SWALL:VG28_BPMU (SWALL:Q9T1W6) (551 aa) fasta scores: E(): 9.8e-83, 47.23% id in 470 aa and Salmonella typhi hypothetical prophage related protein sty1615 SWALL:Q8Z6V1 (EMBL:AL627270) (531 aa) fasta scores: E(): 3.6e-189, 89.08% id in 513 aa.
 
     0.506
pagP
Putative antimicrobial peptide resistance and lipid A acylation protein; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.
  
     0.478
holE
DNA polymerase III, theta subunit; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri DNA polymerase III, theta subunit HolE or b1842 or c2252 or z2891 or ecs2552 or sf1852.1 SWALL:HOLE_ECOLI (SWALL:P28689) (76 aa) fasta scores: E(): 8.7e-18, 67.1% id in 76 aa.
  
     0.475
ECA0372
Conserved hypothetical protein; Similar to Escherichia coli, and Shigella flexneri hypothetical protein YhbP SWALL:AAN44662 (EMBL:U18997) (147 aa) fasta scores: E(): 2.2e-29, 54.54% id in 143 aa; Belongs to the UPF0306 family.
  
     0.462
emrR
Negative regulator of multidrug resistance; Similar to Erwinia chrysanthemi EmrR protein EmrR SWALL:Q93KB2 (EMBL:AJ410307) (170 aa) fasta scores: E(): 2.2e-50, 77.51% id in 169 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 transcriptional repressor MprA or EmrR or b2684 or c3237 or z3985 or ecs3546 SWALL:MPRA_ECOLI (SWALL:P24201) (176 aa) fasta scores: E(): 1.7e-45, 71.34% id in 171 aa.
  
     0.462
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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