STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA3213Similar to Rhizobium meliloti putative transcriptional regulator, AraC family protein rb0963 or smb21385 SWALL:Q92UX2 (EMBL:AL603645) (311 aa) fasta scores: E(): 9.2e-43, 42.9% id in 296 aa, and to Agrobacterium tumefaciens transcriptional regulator, AraC family atu2021 or agr_c_3663 SWALL:Q8UDU8 (EMBL:AE009153) (301 aa) fasta scores: E(): 3.2e-32, 36.17% id in 282 aa. (296 aa)    
Predicted Functional Partners:
ECA3214
Probable short chain dehydrogenase; Similar to Bacillus subtilis 3-oxoacyl-[acyl-carrier protein] reductase FabG SWALL:FABG_BACSU (SWALL:P51831) (246 aa) fasta scores: E(): 4.4e-24, 38.24% id in 251 aa, and to Ralstonia solanacearum probable dehydrogenase/reductase oxidoreductase protein rsc1730 or rs02918 SWALL:Q8XYM8 (EMBL:AL646066) (256 aa) fasta scores: E(): 1.8e-51, 59.91% id in 247 aa.
 
     0.703
ECA1545
Similar to Neisseria meningitidis putative AraC-family transcriptional regulator nma0578 SWALL:Q9JW23 (EMBL:AL162753) (318 aa) fasta scores: E(): 2.2e-06, 26.26% id in 316 aa, and to Pseudomonas stutzeri putative transcriptional activator pdtorfC SWALL:Q9L8R1 (EMBL:AF196567) (235 aa) fasta scores: E(): 2e-15, 35.65% id in 230 aa.
  
     0.660
ECA3783
Similar to Salmonella typhi AraC-family transcriptional regulator sty0395 SWALL:Q8Z909 (EMBL:AL627266) (334 aa) fasta scores: E(): 7.3e-15, 27.68% id in 307 aa, and to Brucella suis transcriptional regulator, AraC family bra1192 SWALL:AAN34350 (EMBL:AE014611) (259 aa) fasta scores: E(): 6.2e-14, 26.33% id in 243 aa.
  
     0.586
gltB
Similar to Escherichia coli glutamate synthase [NADPH] large chain precursor GltB or AspB SWALL:GLTB_ECOLI (SWALL:P09831) (1517 aa) fasta scores: E(): 0, 86.75% id in 1495 aa, and to Yersinia pestis glutamate synthase, large subunit GltB SWALL:AAM83722 (EMBL:AE013613) (1535 aa) fasta scores: E(): 0, 90.25% id in 1498 aa.
    
 0.574
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
     
 0.571
ECA0775
AraC-family transcriptional regulator; Similar to Pseudomonas aeruginosa ChpD SWALL:O87004 (EMBL:U79580) (264 aa) fasta scores: E(): 8.8e-26, 38.49% id in 239 aa, and to Pseudomonas putida transcriptional regulator, AraC family pp2383 SWALL:AAN67996 (EMBL:AE016783) (281 aa) fasta scores: E(): 6.6e-15, 32.51% id in 243 aa. Note that there are no significant database matches to enterobacterial species.
  
     0.477
ECA0615
Similar to Pseudomonas putida transcriptional regulator, AraC family pp2430 SWALL:AAN68042 (EMBL:AE016783) (276 aa) fasta scores: E(): 1.1e-67, 56.72% id in 275 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa2917 SWALL:Q9HZT0 (EMBL:AE004718) (278 aa) fasta scores: E(): 2.1e-63, 53.65% id in 274 aa.
  
     0.422
ECA2787
Similar to Pseudomonas putida transcriptional regulator, AraC family pp3022 SWALL:AAN68630 (EMBL:AE016785) (269 aa) fasta scores: E(): 5.3e-24, 35.03% id in 274 aa, and to Rhizobium meliloti putative transcription regulator protein r01128 or smc00558 SWALL:Q92R06 (EMBL:AL591786) (285 aa) fasta scores: E(): 1.2e-17, 29.65% id in 263 aa.
  
     0.400
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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