STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmJPutative RNA methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. (241 aa)    
Predicted Functional Partners:
suhB
Inositol-1-monophosphatase; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 inositol-1-monophosphatase SuhB or SsyA or b2533 or c3059 or z3800 or ecs3399 SWALL:SUHB_ECOLI (SWALL:P22783) (267 aa) fasta scores: E(): 2.4e-90, 84.64% id in 267 aa.
 
     0.611
iscR
Putative transcriptional regulator; Regulates the transcription of several operons and genes involved in the biogenesis of Fe-S clusters and Fe-S-containing proteins.
       0.556
cysS
cysteinyl-RNA synthetase; Similar to Escherichia coli cysteinyl-tRNA synthetase CusS or b0526 SWALL:SYC_ECOLI (SWALL:P21888) (461 aa) fasta scores: E(): 2.5e-153, 83.94% id in 461 aa; Belongs to the class-I aminoacyl-tRNA synthetase family.
     0.539
rrmJ
Ribosomal RNA large subunit methyltransferase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
  
   
 0.528
ECA0406
Putative permease; Similar to Escherichia coli, and Escherichia coli O6 hypothetical protein YjgQ SWALL:YJGQ_ECOLI (SWALL:P39341) (360 aa) fasta scores: E(): 2.6e-108, 77.24% id in 356 aa, and to Salmonella typhimurium putative permease YjgQ SWALL:Q8ZK26 (EMBL:AE008910) (360 aa) fasta scores: E(): 2.6e-109, 78.37% id in 356 aa.YjgQ belongs to a family of predicted permeases but there is no experimental evidence of this.
  
     0.518
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
 
  
 0.507
dusA
Putative dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily.
  
   
 0.400
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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