STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3248Similar to Yersinia pestis putative exported protein ypo2902 or y1329 SWALL:Q8ZCR6 (EMBL:AJ414154) (224 aa) fasta scores: E(): 8.7e-56, 65.15% id in 221 aa, and to Salmonella typhi putative exported protein sty2799 SWALL:Q8Z4M5 (EMBL:AL627275) (212 aa) fasta scores: E(): 5.3e-44, 57.35% id in 204 aa. (219 aa)    
Predicted Functional Partners:
ECA3247
Similar to Yersinia pestis putative membrane protein ypo2901 SWALL:Q8ZCR7 (EMBL:AJ414154) (340 aa) fasta scores: E(): 3.8e-43, 55.95% id in 361 aa, and to Salmonella typhimurium putative inner membrane protein stm2551 SWALL:Q8ZN38 (EMBL:AE008816) (328 aa) fasta scores: E(): 5.7e-35, 50.28% id in 352 aa; Belongs to the NiCoT transporter (TC 2.A.52) family.
 
   
 0.954
hcaT
Similar to Escherichia coli probable 3-phenylpropionic acid transporter HcaT or b2536 SWALL:HCAT_ECOLI (SWALL:Q47142) (379 aa) fasta scores: E(): 1e-102, 68.17% id in 377 aa.
 
     0.698
ECA4004
Similar to Yersinia pestis hypothetical protein ypo0237 or y4018 SWALL:Q8ZJ84 (EMBL:AJ414141) (66 aa) fasta scores: E(): 3.9e-18, 74.24% id in 66 aa, and to Escherichia coli hypothetical protein yhdl or b3291.1 SWALL:YHDL_ECOLI (SWALL:P36675) (72 aa) fasta scores: E(): 4.3e-16, 60.87% id in 69 aa.
  
     0.695
ECA3246
Similar to Yersinia pestis putative periplasmic substrate-binding transport protein ypo1310 SWALL:Q8ZGI7 (EMBL:AJ414147) (381 aa) fasta scores: E(): 7.2e-48, 35.13% id in 370 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu3391 or agr_l_2862 SWALL:Q8UAI2 (EMBL:AE009269) (377 aa) fasta scores: E(): 2e-86, 58.22% id in 371 aa.
 
     0.586
ECA4366
Similar to Salmonella typhi hypothetical protein Sty4178 SWALL:Q8Z293 (EMBL:AL627281) (523 aa) fasta scores: E(): 3.7e-67, 44.09% id in 381 aa, and to Escherichia coli hypothetical protein yhjs or b3536 SWALL:YHJS_ECOLI (SWALL:P37657) (523 aa) fasta scores: E(): 1.6e-66, 44.97% id in 378 aa.
  
     0.495
ECA4351
Similar to Yersinia pestis putative membrane protein ypo3819 or y0411 SWALL:Q8ZAI2 (EMBL:AJ414159) (208 aa) fasta scores: E(): 7e-55, 66.98% id in 209 aa, and to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein yhhn or stm3575 or sty4236 SWALL:Q8XH18 (EMBL:AE008864) (208 aa) fasta scores: E(): 5.2e-51, 63.63% id in 209 aa.
  
     0.486
traF
Putative plasmid transfer protein; Similar to Shigella sonnei TraF protein SWALL:Q9Z4A1 (EMBL:AB021078) (400 aa) fasta scores: E(): 2.9e-81, 55% id in 400 aa, and to Salmonella typhimurium TraF protein SWALL:Q9R2H5 (EMBL:AB027308) (400 aa) fasta scores: E(): 3.4e-81, 54.75% id in 400 aa, and to Escherichia fergusonii TraF SWALL:Q8KR61 (EMBL:AY046057) (401 aa) fasta scores: E(): 1e-61, 44.52% id in 402 aa.
  
     0.433
ECA0969
Similar to Yersinia pestis putative tetr-family regulatory protein ypo3840 or y0390 SWALL:AAM83979 (EMBL:AJ414159) (228 aa) fasta scores: E(): 1.4e-33, 71.36% id in 213 aa, and to Rhizobium loti transcriptional regulator mll3386 SWALL:Q98GC7 (EMBL:AP003001) (219 aa) fasta scores: E(): 3.2e-30, 48.66% id in 187 aa.
  
     0.427
srfA
Putative virulence effector protein; Similar to Salmonella typhimurium, and Salmonella typhi SrfA or sty1472 SWALL:Q9KIK0 (EMBL:AF231758) (399 aa) fasta scores: E(): 2.4e-16, 41.06% id in 431 aa, and to Yersinia pestis putative virulence factor y2121 SWALL:AAM85682 (EMBL:AE013815) (477 aa) fasta scores: E(): 4.2e-29, 51.02% id in 488 aa.
  
     0.417
ECA2466
Putative exported protein; Similar to Salmonella typhimurium putative inner membrane protein stm0381 SWALL:Q8ZRF2 (EMBL:AE008713) (237 aa) fasta scores: E(): 6.8e-42, 50.22% id in 227 aa, and to Pseudomonas putida conserved hypothetical protein pp1511 SWALL:AAN67132 (EMBL:AE016779) (229 aa) fasta scores: E(): 2e-31, 41.55% id in 231 aa.
  
     0.404
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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