Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hcaTSimilar to Escherichia coli probable 3-phenylpropionic acid transporter HcaT or b2536 SWALL:HCAT_ECOLI (SWALL:Q47142) (379 aa) fasta scores: E(): 1e-102, 68.17% id in 377 aa. (386 aa)    
Predicted Functional Partners:
ECA3248
Similar to Yersinia pestis putative exported protein ypo2902 or y1329 SWALL:Q8ZCR6 (EMBL:AJ414154) (224 aa) fasta scores: E(): 8.7e-56, 65.15% id in 221 aa, and to Salmonella typhi putative exported protein sty2799 SWALL:Q8Z4M5 (EMBL:AL627275) (212 aa) fasta scores: E(): 5.3e-44, 57.35% id in 204 aa.
 
     0.718
ECA3247
Similar to Yersinia pestis putative membrane protein ypo2901 SWALL:Q8ZCR7 (EMBL:AJ414154) (340 aa) fasta scores: E(): 3.8e-43, 55.95% id in 361 aa, and to Salmonella typhimurium putative inner membrane protein stm2551 SWALL:Q8ZN38 (EMBL:AE008816) (328 aa) fasta scores: E(): 5.7e-35, 50.28% id in 352 aa; Belongs to the NiCoT transporter (TC 2.A.52) family.
 
     0.695
ECA3256
Similar to Yersinia pestis putative lipoprotein ypo2915 SWALL:Q8ZCQ6 (EMBL:AJ414154) (331 aa) fasta scores: E(): 7.9e-37, 45.45% id in 253 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yfhg or b2555 or z3831 or ecs3421 or sf2602 SWALL:YFHG_ECOLI (SWALL:P37328) (237 aa) fasta scores: E(): 3.6e-30, 45.61% id in 228 aa.
 
    0.676
sgrR
Putative extracellular solute-binding protein; Activates the small RNA gene sgrS under glucose-phosphate stress conditions as well as yfdZ. Represses its own transcription under both stress and non-stress conditions. Might act as a sensor of the intracellular accumulation of phosphoglucose by binding these molecules in its C-terminal solute-binding domain.
  
     0.455
ECA3246
Similar to Yersinia pestis putative periplasmic substrate-binding transport protein ypo1310 SWALL:Q8ZGI7 (EMBL:AJ414147) (381 aa) fasta scores: E(): 7.2e-48, 35.13% id in 370 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu3391 or agr_l_2862 SWALL:Q8UAI2 (EMBL:AE009269) (377 aa) fasta scores: E(): 2e-86, 58.22% id in 371 aa.
  
    0.425
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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