STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3269HlyD family secretion protein; Similar to Rhizobium leguminosarum PrsE protein prsE SWALL:O05694 (EMBL:Y12758) (435 aa) fasta scores: E(): 4.6e-27, 29.72% id in 434 aa, and to Pseudomonas putida HlyD family secretion protein pp0166 SWALL:AAN65799 (EMBL:AE016774) (458 aa) fasta scores: E(): 1.9e-103, 65.19% id in 454 aa. (453 aa)    
Predicted Functional Partners:
ECA3268
Putative toxin secretion ATP-binding protein; Similar to Actinobacillus pleuropneumoniae Rtx-I toxin determinant B Apxib or clyib or hlyib or appB SWALL:RT1B_ACTPL (SWALL:P26760) (707 aa) fasta scores: E(): 1.1e-55, 28.05% id in 695 aa, and to Pseudomonas putida toxin secretion ATP-binding protein pp0167 SWALL:AAN65800 (EMBL:AE016774) (718 aa) fasta scores: E(): 1.1e-188, 69.83% id in 706 aa, and to Pasteurella haemolytica leukotoxin secretion ATP-binding protein lktB SWALL:HLYB_PASHA (SWALL:P16532) (708 aa) fasta scores: E(): 1.1e-55, 27.84% id in 686 aa.
     0.949
aggA
Agglutination protein; Similar to Pseudomonas putida agglutination protein precursor AggA SWALL:Q52018 (EMBL:M64540) (452 aa) fasta scores: E(): 4e-73, 47.27% id in 440 aa, and to Vibrio cholerae agglutination protein vc1621 SWALL:Q9KRL6 (EMBL:AE004240) (445 aa) fasta scores: E(): 1.6e-51, 36.58% id in 421 aa.
 
   
 0.896
ECA0289
ABC transporter, ATP-binding component; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri probable ABC transporter ATP-binding protein YhbG SWALL:AAN44707 (EMBL:D12938) (241 aa) fasta scores: E(): 2.5e-76, 90.87% id in 241 aa, and to Salmonella typhimurium, and Salmonella typhi putative ABC superfamily Yhbg SWALL:Q8XFR6 (EMBL:AE008852) (241 aa) fasta scores: E(): 1.1e-75, 90.04% id in 241 aa.
  
 
 0.876
lptA
Putative exported protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm.
  
 
 0.806
ECA3265
Hypothetical protein; No significant database matches.
 
     0.800
ECA1097
Similar to Pseudomonas putida protein secretion ABC efflux system, permease and ATP-binding protein pp0804 SWALL:AAN66429 (EMBL:AE016777) (722 aa) fasta scores: E(): 5.9e-111, 46.31% id in 691 aa, and to Salmonella typhi putative type i secretion protein, ATP-binding protein sty2877 SWALL:Q8Z4H9 (EMBL:AL627276) (718 aa) fasta scores: E(): 1.4e-103, 42.34% id in 692 aa.
     0.785
ECA0405
Putative permease; Similar to Salmonella typhimurium putative permease YjgP SWALL:Q8ZK27 (EMBL:AE008910) (366 aa) fasta scores: E(): 1.1e-107, 73.33% id in 360 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YjgP SWALL:YJGP_ECOLI (SWALL:P39340) (366 aa) fasta scores: E(): 1.3e-106, 73.46% id in 358 aa. YjgP belongs to a family of predicted permeases but there is no experimental evidence of this.
  
 
 0.765
ECA3263
Putative exported protein; Similar to Pseudomonas putida conserved hypothetical protein pp0164 SWALL:AAN65797 (EMBL:AE016774) (213 aa) fasta scores: E(): 5.6e-51, 59.9% id in 207 aa, and to Vibrio vulnificus predicted periplasmic protein vv21126 SWALL:AAO08027 (EMBL:AE016812) (237 aa) fasta scores: E(): 2e-31, 44.87% id in 205 aa.
  
     0.763
ECA0406
Putative permease; Similar to Escherichia coli, and Escherichia coli O6 hypothetical protein YjgQ SWALL:YJGQ_ECOLI (SWALL:P39341) (360 aa) fasta scores: E(): 2.6e-108, 77.24% id in 356 aa, and to Salmonella typhimurium putative permease YjgQ SWALL:Q8ZK26 (EMBL:AE008910) (360 aa) fasta scores: E(): 2.6e-109, 78.37% id in 356 aa.YjgQ belongs to a family of predicted permeases but there is no experimental evidence of this.
  
 
 0.760
ECA3264
Putative signaling membrane protein; Similar to Pseudomonas putida GGDEF domain protein pp0165 SWALL:AAN65798 (EMBL:AE016774) (648 aa) fasta scores: E(): 8e-140, 56.7% id in 649 aa, and to Vibrio vulnificus fog: EAL domain protein vv21127 SWALL:AAO08028 (EMBL:AE016812) (639 aa) fasta scores: E(): 2.7e-33, 26.2% id in 641 aa.
  
     0.709
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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