STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
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[Homology]
Score
ECA3286Conserved hypothetical protein; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). (248 aa)    
Predicted Functional Partners:
rsmI
Putative tetrapyrrole methylase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
 
  
 0.656
ECA0725
Similar to Yersinia pestis hypothetical protein ypo3475 SWALL:YY75_YERPE (SWALL:Q8ZBE1) (95 aa) fasta scores: E(): 4.5e-25, 80% id in 85 aa, and to Escherichia coli hypothetical protein YhbQ SWALL:YHBQ_ECOLI (SWALL:P45472) (100 aa) fasta scores: E(): 1.4e-18, 70.51% id in 78 aa; Belongs to the UPF0213 family.
  
  
 0.597
srmB
ATP-dependent RNA helicase; DEAD-box RNA helicase involved in the assembly of the 50S ribosomal subunit at low temperature. Exhibits RNA-stimulated ATP hydrolysis and RNA unwinding activity; Belongs to the DEAD box helicase family. SrmB subfamily.
     
 0.551
slyX
Conserved hypothetical protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 SlyX protein slyx or b3348 or c4122 or z4706 or ecs4199 SWALL:SLYX_ECOLI (SWALL:P30857) (72 aa) fasta scores: E(): 5.2e-12, 59.72% id in 72 aa, and to Yersinia pestis host factor for lysis of phix174 infection SlyX or y3976 SWALL:AAM87520 (EMBL:AE014001) (72 aa) fasta scores: E(): 1.5e-13, 63.88% id in 72 aa; Belongs to the SlyX family.
  
   
 0.417
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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