Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ECA3292Putative oxidoreductase; Similar to Caulobacter crescentus fmn oxidoreductase cc2129 SWALL:Q9A6G5 (EMBL:AE005885) (363 aa) fasta scores: E(): 8.2e-85, 61.14% id in 368 aa, and to Streptomyces coelicolor putative oxidoreduxtase sco4297 or scd95a.30 SWALL:Q9KXU4 (EMBL:AL939119) (376 aa) fasta scores: E(): 2.7e-75, 55.31% id in 367 aa. (368 aa)    
Predicted Functional Partners:
gltB
Similar to Escherichia coli glutamate synthase [NADPH] large chain precursor GltB or AspB SWALL:GLTB_ECOLI (SWALL:P09831) (1517 aa) fasta scores: E(): 0, 86.75% id in 1495 aa, and to Yersinia pestis glutamate synthase, large subunit GltB SWALL:AAM83722 (EMBL:AE013613) (1535 aa) fasta scores: E(): 0, 90.25% id in 1498 aa.
    
 0.838
ECA3293
Putative oxidoreductase; Similar to Rhizobium loti norsolorinic acid reductase mll1952 SWALL:Q98JG7 (EMBL:AP002998) (348 aa) fasta scores: E(): 1.6e-69, 55.58% id in 349 aa, and to Xanthomonas campestris rhizopine catabolism protein moca or xcc3724 SWALL:Q8P4I3 (EMBL:AE012493) (356 aa) fasta scores: E(): 6.5e-46, 45.37% id in 346 aa.
       0.509
ECA2950
TetR-family regulatory protein; Similar to Xanthomonas campestris transcriptional regulator xcc0044 SWALL:Q8PED7 (EMBL:AE012097) (189 aa) fasta scores: E(): 7.7e-20, 49.6% id in 125 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2484 SWALL:Q9I0Z8 (EMBL:AE004676) (204 aa) fasta scores: E(): 5.9e-19, 36.68% id in 199 aa.
  
  
 0.489
fumA
Fumarate hydratase class I, aerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
 0.461
gcvP
Putative glycine cleavage system P protein (glycine dehydrogenase [decarboxylating]); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.444
ECA3294
Similar to Rhizobium meliloti putative transcriptional regulator ra1038 or sma1887 SWALL:Q92Y50 (EMBL:AE007290) (200 aa) fasta scores: E(): 2.6e-23, 41.48% id in 188 aa, and to Agrobacterium tumefaciens transcriptional regulator, TetR family atu4217 or agr_l_1283 SWALL:Q8U882 (EMBL:AE009351) (199 aa) fasta scores: E(): 5.5e-23, 42.07% id in 183 aa.
  
  
 0.417
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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