STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3293Putative oxidoreductase; Similar to Rhizobium loti norsolorinic acid reductase mll1952 SWALL:Q98JG7 (EMBL:AP002998) (348 aa) fasta scores: E(): 1.6e-69, 55.58% id in 349 aa, and to Xanthomonas campestris rhizopine catabolism protein moca or xcc3724 SWALL:Q8P4I3 (EMBL:AE012493) (356 aa) fasta scores: E(): 6.5e-46, 45.37% id in 346 aa. (349 aa)    
Predicted Functional Partners:
dkgA
Similar to Escherichia coli 2,5-diketo-D-gluconic acid reductase A DkgA or b3012 SWALL:DKGA_ECOLI (SWALL:Q46857) (275 aa) fasta scores: E(): 1e-80, 72.42% id in 272 aa. In Salmonella typhi this is a putative pseudogene but it is apparently intact here.
 
 0.701
ECA2346
Similar to Salmonella typhi putative oxidoreductase sty1828 SWALL:Q8Z6F0 (EMBL:AL627271) (285 aa) fasta scores: E(): 1.1e-72, 63.7% id in 281 aa, and to Escherichia coli hypothetical protein yeae yeae or b1781 SWALL:YEAE_ECOLI (SWALL:P76234) (284 aa) fasta scores: E(): 4.1e-72, 63.7% id in 281 aa.
 
0.584
ECA3294
Similar to Rhizobium meliloti putative transcriptional regulator ra1038 or sma1887 SWALL:Q92Y50 (EMBL:AE007290) (200 aa) fasta scores: E(): 2.6e-23, 41.48% id in 188 aa, and to Agrobacterium tumefaciens transcriptional regulator, TetR family atu4217 or agr_l_1283 SWALL:Q8U882 (EMBL:AE009351) (199 aa) fasta scores: E(): 5.5e-23, 42.07% id in 183 aa.
       0.555
ECA0250
Similar to Pseudomonas syringae oxidoreductase, aldo/keto reductase family pspto3075 SWALL:Q880S6 (EMBL:AE016867) (350 aa) fasta scores: E(): 1.5e-90, 66.57% id in 350 aa, and to Xanthomonas axonopodis L-fucose dehydrogenase xac0158 SWALL:Q8PR11 (EMBL:AE011640) (349 aa) fasta scores: E(): 6.9e-73, 52.99% id in 351 aa.
  
     0.544
ECA3292
Putative oxidoreductase; Similar to Caulobacter crescentus fmn oxidoreductase cc2129 SWALL:Q9A6G5 (EMBL:AE005885) (363 aa) fasta scores: E(): 8.2e-85, 61.14% id in 368 aa, and to Streptomyces coelicolor putative oxidoreduxtase sco4297 or scd95a.30 SWALL:Q9KXU4 (EMBL:AL939119) (376 aa) fasta scores: E(): 2.7e-75, 55.31% id in 367 aa.
       0.509
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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