STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3295Putative membrane protein; Similar to Chlorobium tepidum hypothetical protein Ct0748 SWALL:Q8KEE1 (EMBL:AE012845) (133 aa) fasta scores: E(): 1.8e-18, 48% id in 125 aa, and to Nitrosomonas europaea hypothetical protein ne1276 SWALL:CAD85187 (EMBL:BX321860) (134 aa) fasta scores: E(): 1.9e-16, 43.54% id in 124 aa. (144 aa)    
Predicted Functional Partners:
ECA3005
Similar to Ralstonia solanacearum putative glutamine amidotransferase protein rsc0213 or rs00645 SWALL:Q8Y2W9 (EMBL:AL646058) (238 aa) fasta scores: E(): 9e-37, 45.37% id in 238 aa, and to Xylella fastidiosa GMP synthase xf0560 SWALL:Q9PFU7 (EMBL:AE003903) (240 aa) fasta scores: E(): 1.1e-28, 43.8% id in 242 aa.
 
   
 0.467
ECA1908
Putative membrane-attached phosphoesterase; Similar to Rhodococcus fascians putative integral membrane protein SWALL:CAD52983 (EMBL:AJ301559) (379 aa) fasta scores: E(): 2.4e-32, 35.1% id in 376 aa, and to Leptospira interrogans predicted DNA repair exonuclease la3166 SWALL:AAN50364 (EMBL:AE011479) (280 aa) fasta scores: E(): 1.5e-31, 40.22% id in 271 aa.
  
     0.411
ECA3294
Similar to Rhizobium meliloti putative transcriptional regulator ra1038 or sma1887 SWALL:Q92Y50 (EMBL:AE007290) (200 aa) fasta scores: E(): 2.6e-23, 41.48% id in 188 aa, and to Agrobacterium tumefaciens transcriptional regulator, TetR family atu4217 or agr_l_1283 SWALL:Q8U882 (EMBL:AE009351) (199 aa) fasta scores: E(): 5.5e-23, 42.07% id in 183 aa.
       0.408
mgtB
Magnesium transport ATPase; Similar to Salmonella typhimurium Mg(2+) transport ATPase MgtB or stm3763 SWALL:ATMB_SALTY (SWALL:P22036) (908 aa) fasta scores: E(): 0, 70.62% id in 909 aa.
   
  0.404
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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