STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3308Putative aminotransferase; Similar to Yersinia pestis similar to tyrosine aminotransferase ypo1960 SWALL:Q9ZC65 (EMBL:AL031866) (473 aa) fasta scores: E(): 1.5e-54, 34.53% id in 472 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4132 SWALL:Q9HWP9 (EMBL:AE004829) (471 aa) fasta scores: E(): 9e-61, 38.18% id in 474 aa. (486 aa)    
Predicted Functional Partners:
ECA3309
Putative membrane protein; Similar to Rhizobium meliloti hypothetical transmembrane protein smc01425 r02108 or smc01425 SWALL:Q92NS0 (EMBL:AL591789) (197 aa) fasta scores: E(): 2.7e-22, 39.68% id in 189 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2306 SWALL:Q9I1G9 (EMBL:AE004657) (205 aa) fasta scores: E(): 3e-20, 37.37% id in 198 aa.
 
     0.710
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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