STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3324Similar to Salmonella typhi ABC transporter integral membrane protein sty0195 SWALL:Q8Z9D6 (EMBL:AL627265) (256 aa) fasta scores: E(): 1.6e-82, 83.59% id in 256 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yadh or b0128 or c0157 or z0139 or ecs0132 or sf0125 SWALL:YADH_ECOLI (SWALL:P36880) (256 aa) fasta scores: E(): 1.3e-81, 82.42% id in 256 aa. (256 aa)    
Predicted Functional Partners:
ECA3325
Similar to Yersinia pestis putative ABC transporter, ATP-binding protein ypo3406 or y0780 SWALL:AAM84367 (EMBL:AJ414157) (308 aa) fasta scores: E(): 3.2e-91, 85.25% id in 312 aa, and to Escherichia coli hypothetical ABC transporter ATP-binding protein yadg or b0127 SWALL:YADG_ECOLI (SWALL:P36879) (308 aa) fasta scores: E(): 6.1e-88, 85.05% id in 301 aa.
  
 0.976
ECA3326
Similar to Yersinia pestis hypothetical protein Ypo0143 SWALL:Q8ZJG5 (EMBL:AJ414141) (64 aa) fasta scores: E(): 0.019, 55.55% id in 36 aa.
       0.675
ECA2595
Similar to Yersinia pestis hypothetical protein Ypo1385 SWALL:Q8ZGB8 (EMBL:AJ414148) (588 aa) fasta scores: E(): 5.2e-206, 84.24% id in 584 aa, and to Escherichia coli hypothetical protein ycao or b0905 SWALL:YCAO_ECOLI (SWALL:P75838) (586 aa) fasta scores: E(): 1.9e-200, 81.84% id in 584 aa.
  
  
 0.549
ECA3327
Putative carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
       0.546
ECA2338
Similar to Yersinia pestis putative nitroreductase ypo2163 or y2159 SWALL:Q8ZEK2 (EMBL:AJ414151) (183 aa) fasta scores: E(): 1.3e-57, 73.22% id in 183 aa, and to Salmonella typhimurium, and Salmonella typhi putative oxidoreductase ydja or stm1296 or sty1818 SWALL:Q8XGY1 (EMBL:AE008756) (183 aa) fasta scores: E(): 4.3e-52, 69.39% id in 183 aa.
  
  
 0.529
ECA0351
Probable nitroreductase; Similar to Bacillus subtilis nitro/flavin reductase NfrA or NfrA1 or Ipa-43D SWALL:NFRA_BACSU (SWALL:P39605) (249 aa) fasta scores: E(): 5.2e-19, 29.83% id in 248 aa, and to Clostridium acetobutylicum ortholog ycnd b.subtilis, nitroreductase cac0718 SWALL:Q97L47 (EMBL:AE007587) (246 aa) fasta scores: E(): 1.2e-42, 45.49% id in 244 aa; Belongs to the flavin oxidoreductase frp family.
  
  
 0.504
nfsA
Similar to Escherichia coli oxygen-insensitive NADPH nitroreductase NfsA or MdaA or Mda18 or b0851 SWALL:NFSA_ECOLI (SWALL:P17117) (240 aa) fasta scores: E(): 7.3e-62, 65.83% id in 240 aa; Belongs to the flavin oxidoreductase frp family.
  
  
 0.504
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
  
  
 0.492
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
  
  
 0.488
macB
Macrolide-specific ABC-type efflux carrier; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
     
 0.442
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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