STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3327Putative carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (213 aa)    
Predicted Functional Partners:
cah
Carbonic anhydrase; Reversible hydration of carbon dioxide; Belongs to the alpha-carbonic anhydrase family.
     
 0.930
focA
Probable formate transporter; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 probable formate transporter 1 FocA or FocA_2 or b0904 or c1042 or z1250 or ecs0987 SWALL:FOCA_ECOLI (SWALL:P21501) (285 aa) fasta scores: E(): 8.3e-94, 80.7% id in 285 aa.
  
  
 0.658
ECA3084
Similar to Salmonella typhi putative membrane protein sty2625 SWALL:Q8Z4Y7 (EMBL:AL627274) (313 aa) fasta scores: E(): 4.1e-76, 65.06% id in 312 aa, and to Escherichia coli O157:H7 putative transport yfdc or z3611 or ecs3230 SWALL:Q8XCN1 (EMBL:AE005466) (310 aa) fasta scores: E(): 8.4e-76, 66% id in 300 aa.
  
  
 0.658
ECA3326
Similar to Yersinia pestis hypothetical protein Ypo0143 SWALL:Q8ZJG5 (EMBL:AJ414141) (64 aa) fasta scores: E(): 0.019, 55.55% id in 36 aa.
       0.557
ECA3325
Similar to Yersinia pestis putative ABC transporter, ATP-binding protein ypo3406 or y0780 SWALL:AAM84367 (EMBL:AJ414157) (308 aa) fasta scores: E(): 3.2e-91, 85.25% id in 312 aa, and to Escherichia coli hypothetical ABC transporter ATP-binding protein yadg or b0127 SWALL:YADG_ECOLI (SWALL:P36879) (308 aa) fasta scores: E(): 6.1e-88, 85.05% id in 301 aa.
       0.553
ECA2021
Similar to Yersinia pestis sulfate transporter y2285 SWALL:Q8D0E3 (EMBL:AE013831) (565 aa) fasta scores: E(): 3.6e-172, 80.56% id in 561 aa, and to Escherichia coli, and Escherichia coli O157:H7 putative sulfate transporter ychm or b1206 or z1977 or ecs1711 SWALL:YCHM_ECOLI (SWALL:P40877) (550 aa) fasta scores: E(): 1.4e-156, 76.61% id in 543 aa.
 
  
 0.550
ECA3324
Similar to Salmonella typhi ABC transporter integral membrane protein sty0195 SWALL:Q8Z9D6 (EMBL:AL627265) (256 aa) fasta scores: E(): 1.6e-82, 83.59% id in 256 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yadh or b0128 or c0157 or z0139 or ecs0132 or sf0125 SWALL:YADH_ECOLI (SWALL:P36880) (256 aa) fasta scores: E(): 1.3e-81, 82.42% id in 256 aa.
       0.546
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.544
gpt
Xanthine-guanine phosphoribosyltransferase; Acts on guanine, xanthine and to a lesser extent hypoxanthine; Belongs to the purine/pyrimidine phosphoribosyltransferase family. XGPT subfamily.
   
  
 0.544
adhE
Aldehyde-alcohol dehydrogenase; Similar to Escherichia coli, and Escherichia coli O157:H7 aldehyde-alcohol dehydrogenase [includes: alcohol dehydrogenase, acetaldehyde dehydrogenase, and pyruvate-formate-lyase deactivase AdhE or Ana or b1241 or z2016 or ecs1741 SWALL:ADHE_ECOLI (SWALL:P17547) (890 aa) fasta scores: E(): 0, 89.1% id in 890 aa; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
     
 0.403
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.