STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gloBProbable hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid. (251 aa)    
Predicted Functional Partners:
gloA
Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.
 
 0.994
dld
D-lactate dehydrogenase; Catalyzes the oxidation of D-lactate to pyruvate. Belongs to the quinone-dependent D-lactate dehydrogenase family.
     
 0.971
ldhA
Similar to Escherichia coli D-lactate dehydrogenase LdhA or HslI or HtpH or b1380 SWALL:LDHD_ECOLI (SWALL:P52643) (329 aa) fasta scores: E(): 1e-102, 80.36% id in 326 aa; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
  0.946
ECA2544
Conserved hypothetical protein; Similar to Yersinia pestis metallo-beta-lactamase superfamily protein ypo1409 or y2761 SWALL:Q8ZG96 (EMBL:AJ414148) (215 aa) fasta scores: E(): 8.9e-67, 72.55% id in 215 aa, and to Escherichia coli hypothetical protein ycbl or b0927 SWALL:YCBL_ECOLI (SWALL:P75849) (215 aa) fasta scores: E(): 3.5e-65, 70.23% id in 215 aa; putative metallo-beta-lactamase.
     
 0.946
ECA2168
Similar to Listeria monocytogenes hypothetical protein Lmo0406 SWALL:Q8Y9W3 (EMBL:AL591975) (126 aa) fasta scores: E(): 3e-16, 43.3% id in 127 aa, and to Bacillus subtilis hypothetical protein YyaH SWALL:YYAH_BACSU (SWALL:P37516) (126 aa) fasta scores: E(): 8.2e-14, 36.22% id in 127 aa.
  
  0.896
ECA3341
Similar to Yersinia pestis hypothetical protein ypo1080 or y3096 SWALL:AAM86646 (EMBL:AJ414146) (239 aa) fasta scores: E(): 6.6e-62, 61.86% id in 236 aa, and to Salmonella typhimurium putative sam-dependent methyltransferase yafs or stm0262 SWALL:Q8ZRM1 (EMBL:AE008707) (240 aa) fasta scores: E(): 6.6e-60, 59.07% id in 237 aa.
     
 0.670
mltD
Similar to Escherichia coli, and Escherichia coli O6 membrane-bound lytic murein transglycosylase D precursor MltD or DniR or b0211 or c0248 SWALL:MLTD_ECOLI (SWALL:P23931) (452 aa) fasta scores: E(): 7e-113, 66.81% id in 464 aa.
       0.655
ECA3563
Conserved hypothetical protein; Similar to Xanthomonas axonopodis nonf-related protein NonF or xac3491 SWALL:Q8PGX1 (EMBL:AE011997) (226 aa) fasta scores: E(): 1.8e-58, 68.77% id in 221 aa, and to Rhizobium meliloti hypothetical protein rb0205 or smb20212 SWALL:Q92WX2 (EMBL:AL603642) (226 aa) fasta scores: E(): 3.3e-57, 66.96% id in 224 aa.
    
 0.613
gshB
Similar to Escherichia coli glutathione synthetase GshB or Gsh-II or b2947 SWALL:GSHB_ECOLI (SWALL:P04425) (316 aa) fasta scores: E(): 2.1e-100, 81.2% id in 314 aa; Belongs to the prokaryotic GSH synthase family.
 
   
 0.584
ECA1856
Putative FAD-binding oxidase; Similar to Yersinia pestis hypothetical protein ypo2407 or y1932 SWALL:AAM85498 (EMBL:AJ414152) (1018 aa) fasta scores: E(): 0, 82.41% id in 1018 aa, and to Escherichia coli hypothetical protein ydij or b1687 SWALL:YDIJ_ECOLI (SWALL:P77748) (1018 aa) fasta scores: E(): 0, 79.05% id in 1017 aa.
    
 0.557
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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