Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ECA0281 | obg | ECA0281 | ECA0693 | Similar to Yersinia pestis hypothetical protein Ypo3691 SWALL:Q8ZAU5 (EMBL:AJ414158) (182 aa) fasta scores: E(): 5.9e-48, 80.55% id in 180 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein Yjga SWALL:YJGA_ECOLI (SWALL:P26650) (183 aa) fasta scores: E(): 6.6e-46, 77.77% id in 180 aa; Belongs to the UPF0307 family. | Putative GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.446 |
| ECA0281 | rluD | ECA0281 | ECA3347 | Similar to Yersinia pestis hypothetical protein Ypo3691 SWALL:Q8ZAU5 (EMBL:AJ414158) (182 aa) fasta scores: E(): 5.9e-48, 80.55% id in 180 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein Yjga SWALL:YJGA_ECOLI (SWALL:P26650) (183 aa) fasta scores: E(): 6.6e-46, 77.77% id in 180 aa; Belongs to the UPF0307 family. | Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.700 |
| ECA0281 | rplC | ECA0281 | ECA4031 | Similar to Yersinia pestis hypothetical protein Ypo3691 SWALL:Q8ZAU5 (EMBL:AJ414158) (182 aa) fasta scores: E(): 5.9e-48, 80.55% id in 180 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein Yjga SWALL:YJGA_ECOLI (SWALL:P26650) (183 aa) fasta scores: E(): 6.6e-46, 77.77% id in 180 aa; Belongs to the UPF0307 family. | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.455 |
| ECA0281 | rplM | ECA0281 | ECA0306 | Similar to Yersinia pestis hypothetical protein Ypo3691 SWALL:Q8ZAU5 (EMBL:AJ414158) (182 aa) fasta scores: E(): 5.9e-48, 80.55% id in 180 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein Yjga SWALL:YJGA_ECOLI (SWALL:P26650) (183 aa) fasta scores: E(): 6.6e-46, 77.77% id in 180 aa; Belongs to the UPF0307 family. | 50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.445 |
| ECA0281 | rplO | ECA0281 | ECA4012 | Similar to Yersinia pestis hypothetical protein Ypo3691 SWALL:Q8ZAU5 (EMBL:AJ414158) (182 aa) fasta scores: E(): 5.9e-48, 80.55% id in 180 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein Yjga SWALL:YJGA_ECOLI (SWALL:P26650) (183 aa) fasta scores: E(): 6.6e-46, 77.77% id in 180 aa; Belongs to the UPF0307 family. | 50S ribosomal subunit protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.430 |
| ECA0281 | rplS | ECA0281 | ECA3356 | Similar to Yersinia pestis hypothetical protein Ypo3691 SWALL:Q8ZAU5 (EMBL:AJ414158) (182 aa) fasta scores: E(): 5.9e-48, 80.55% id in 180 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein Yjga SWALL:YJGA_ECOLI (SWALL:P26650) (183 aa) fasta scores: E(): 6.6e-46, 77.77% id in 180 aa; Belongs to the UPF0307 family. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.447 |
| ECA0281 | rplT | ECA0281 | ECA2419 | Similar to Yersinia pestis hypothetical protein Ypo3691 SWALL:Q8ZAU5 (EMBL:AJ414158) (182 aa) fasta scores: E(): 5.9e-48, 80.55% id in 180 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein Yjga SWALL:YJGA_ECOLI (SWALL:P26650) (183 aa) fasta scores: E(): 6.6e-46, 77.77% id in 180 aa; Belongs to the UPF0307 family. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.430 |
| ECA0281 | rplU | ECA0281 | ECA0690 | Similar to Yersinia pestis hypothetical protein Ypo3691 SWALL:Q8ZAU5 (EMBL:AJ414158) (182 aa) fasta scores: E(): 5.9e-48, 80.55% id in 180 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein Yjga SWALL:YJGA_ECOLI (SWALL:P26650) (183 aa) fasta scores: E(): 6.6e-46, 77.77% id in 180 aa; Belongs to the UPF0307 family. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.444 |
| ECA3346 | rluD | ECA3346 | ECA3347 | Similar to Yersinia pestis hypothetical protein ypo3276 or y0913 SWALL:Q8ZBV8 (EMBL:AJ414156) (243 aa) fasta scores: E(): 1.6e-62, 66.25% id in 240 aa, and to Salmonella typhi hypothetical protein Sty2850 SWALL:Q8Z4J1 (EMBL:AL627276) (243 aa) fasta scores: E(): 9.7e-62, 64.16% id in 240 aa; Belongs to the multicopper oxidase YfiH/RL5 family. | Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.730 |
| obg | ECA0281 | ECA0693 | ECA0281 | Putative GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | Similar to Yersinia pestis hypothetical protein Ypo3691 SWALL:Q8ZAU5 (EMBL:AJ414158) (182 aa) fasta scores: E(): 5.9e-48, 80.55% id in 180 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein Yjga SWALL:YJGA_ECOLI (SWALL:P26650) (183 aa) fasta scores: E(): 6.6e-46, 77.77% id in 180 aa; Belongs to the UPF0307 family. | 0.446 |
| obg | rluD | ECA0693 | ECA3347 | Putative GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.895 |
| obg | rplC | ECA0693 | ECA4031 | Putative GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.757 |
| obg | rplM | ECA0693 | ECA0306 | Putative GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.773 |
| obg | rplO | ECA0693 | ECA4012 | Putative GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 50S ribosomal subunit protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.775 |
| obg | rplS | ECA0693 | ECA3356 | Putative GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.869 |
| obg | rplT | ECA0693 | ECA2419 | Putative GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.939 |
| obg | rplU | ECA0693 | ECA0690 | Putative GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.918 |
| obg | trmE | ECA0693 | ECA4446 | Putative GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | Probable tRNA modification GTPase; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.644 |
| rluD | ECA0281 | ECA3347 | ECA0281 | Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Similar to Yersinia pestis hypothetical protein Ypo3691 SWALL:Q8ZAU5 (EMBL:AJ414158) (182 aa) fasta scores: E(): 5.9e-48, 80.55% id in 180 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein Yjga SWALL:YJGA_ECOLI (SWALL:P26650) (183 aa) fasta scores: E(): 6.6e-46, 77.77% id in 180 aa; Belongs to the UPF0307 family. | 0.700 |
| rluD | ECA3346 | ECA3347 | ECA3346 | Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Similar to Yersinia pestis hypothetical protein ypo3276 or y0913 SWALL:Q8ZBV8 (EMBL:AJ414156) (243 aa) fasta scores: E(): 1.6e-62, 66.25% id in 240 aa, and to Salmonella typhi hypothetical protein Sty2850 SWALL:Q8Z4J1 (EMBL:AL627276) (243 aa) fasta scores: E(): 9.7e-62, 64.16% id in 240 aa; Belongs to the multicopper oxidase YfiH/RL5 family. | 0.730 |
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