STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3354Similar to Shigella flexneri orf, conserved hypothetical protein yfil or sf2662 SWALL:AAN44158 (EMBL:AE015282) (127 aa) fasta scores: E(): 2.5e-11, 38.33% id in 120 aa, and to Escherichia coli hypothetical protein yfil yfil or b2602 SWALL:YFIL_ECOLI (SWALL:P11289) (134 aa) fasta scores: E(): 2.6e-11, 38.33% id in 120 aa. (124 aa)    
Predicted Functional Partners:
ECA3353
Putative two-component system response regulator; Similar to Yersinia pestis hypothetical response regulatory protein ypo3287/y0902 ypo3287 or y0902 SWALL:Q8ZBV2 (EMBL:AJ414156) (238 aa) fasta scores: E(): 1.1e-70, 77.31% id in 238 aa, and to Salmonella typhimurium hypothetical response regulatory protein yeht yeht or stm2158 SWALL:Q8ZNN2 (EMBL:AE008796) (239 aa) fasta scores: E(): 1e-51, 55% id in 240 aa.
       0.705
ECA3355
Similar to Ralstonia solanacearum hypothetical protein rsc2286 or rs01270 SWALL:Q8XX32 (EMBL:AL646069) (317 aa) fasta scores: E(): 4e-55, 49.83% id in 311 aa, and to Xanthomonas campestris hypothetical protein Xcc1543 SWALL:Q8PAE2 (EMBL:AE012255) (319 aa) fasta scores: E(): 2.2e-50, 47.84% id in 301 aa.
       0.419
tyrA
Similar to Escherichia coli T-protein [includes: chorismate mutase and prephenate dehydrogenase] TyrA or b2600 SWALL:TYRA_ECOLI (SWALL:P07023) (373 aa) fasta scores: E(): 1.6e-123, 87.13% id in 373 aa.
       0.406
aroF
Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).
       0.406
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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