STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3364Similar to Yersinia pestis putative membrane protein ypo3302 or y0886 SWALL:Q8ZBU1 (EMBL:AJ414156) (142 aa) fasta scores: E(): 4.6e-36, 69.5% id in 141 aa, and to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein yqaa or stm2819 or sty2945 SWALL:Q8XGM5 (EMBL:AE008828) (141 aa) fasta scores: E(): 2.6e-31, 55.31% id in 141 aa. (142 aa)    
Predicted Functional Partners:
ECA3365
Similar to Yersinia pestis putative hydrolase ypo3303 or y0885 SWALL:Q8ZBU0 (EMBL:AJ414156) (188 aa) fasta scores: E(): 1.9e-51, 72.34% id in 188 aa, and to Escherichia coli hypothetical protein yqab or b2690 SWALL:YQAB_ECOLI (SWALL:P77475) (188 aa) fasta scores: E(): 4.7e-47, 65.42% id in 188 aa.
  
    0.840
gshA
Glutamate--cysteine ligase; Similar to Escherichia coli, and Escherichia coli O6 glutamate--cysteine ligase GshA or Gsh-I or b2688 or c3245 SWALL:GSH1_ECOLI (SWALL:P06980) (518 aa) fasta scores: E(): 1.3e-158, 73.15% id in 514 aa; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.
       0.609
ECA1182
Putative transport protein; Similar to Yersinia pestis putative potassium antiporter RosB or ypo3094 or y1086 SWALL:Q8ZCA2 (EMBL:AJ414155) (563 aa) fasta scores: E(): 7.3e-162, 81.52% id in 563 aa, and to Salmonella typhi putative transport protein sty0536 SWALL:Q8Z8S9 (EMBL:AL627267) (558 aa) fasta scores: E(): 1.5e-155, 79.27% id in 555 aa; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
    0.572
luxS
Autoinducer-2 production protein; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family.
 
     0.504
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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