STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
marCSimilar to Escherichia coli, and Shigella flexneri multiple antibiotic resistance protein MarC or b1529 or sf1565 SWALL:MARC_ECOLI (SWALL:P31123) (221 aa) fasta scores: E(): 9.6e-59, 71.42% id in 224 aa. (224 aa)    
Predicted Functional Partners:
ECA3372
Similar to Anabaena sp. hypothetical protein All2381 SWALL:Q8YUG5 (EMBL:AP003589) (151 aa) fasta scores: E(): 7e-05, 27.46% id in 142 aa, and to Streptomyces lincolnensis hypothetical 17.2 kDa protein in melc2-rnhh intergenic region SWALL:YMEL_STRLN (SWALL:P55049) (150 aa) fasta scores: E(): 0.00028, 25.87% id in 143 aa.
       0.550
bspA
Putative mechanosensitive ion channel; Similar to Erwinia chrysanthemi BspA protein precursor BspA SWALL:Q9EV03 (EMBL:AJ251781) (1106 aa) fasta scores: E(): 0, 77.97% id in 1108 aa, and to Yersinia pestis putative membrane transport protein ypo0363 or y0619 SWALL:AAM84207 (EMBL:AJ414142) (1119 aa) fasta scores: E(): 0, 71.54% id in 1114 aa.
 
    0.489
ECA3374
Similar to Ralstonia solanacearum probable transmembrane protein rsc1893 or rs03455 SWALL:Q8XY70 (EMBL:AL646067) (533 aa) fasta scores: E(): 6.6e-66, 37.96% id in 511 aa, and to Pseudomonas putida ggdef family protein pp2413 SWALL:AAN68025 (EMBL:AE016783) (544 aa) fasta scores: E(): 3.3e-73, 41.66% id in 516 aa.
       0.448
ECA3118
Putative mechanosensitive ion channel protein; Similar to Pseudomonas putida membrane protein, putative pp0707 SWALL:AAN66332 (EMBL:AE016776) (855 aa) fasta scores: E(): 7.4e-106, 43.1% id in 798 aa, and to Xanthomonas campestris hypothetical protein Xcc0402 SWALL:Q8PDD8 (EMBL:AE012136) (821 aa) fasta scores: E(): 4e-50, 30.14% id in 806 aa, and to Erwinia chrysanthemi BspA protein precursor BspA SWALL:Q9EV03 (EMBL:AJ251781) (1106 aa) fasta scores: E(): 1.5e-22, 22.75% id in 813 aa.
  
    0.411
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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