STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3378Similar to Yersinia pestis pesticin immunity protein Pim or yppcp1.04 SWALL:Q57285 (EMBL:Z54145) (141 aa) fasta scores: E(): 0.0013, 30.76% id in 143 aa. (140 aa)    
Predicted Functional Partners:
ECA3379
Similar to Nocardia aerocolonigenes putative glycosyltransferase RbmA or Ngt SWALL:BAC15749 (EMBL:AF534707) (421 aa) fasta scores: E(): 9.7e-34, 31.88% id in 414 aa, and to Streptomyces sp. TP-A0274 N-glycosyltransferase staG SWALL:BAC55209 (EMBL:AB088119) (446 aa) fasta scores: E(): 6.3e-32, 30.76% id in 416 aa.
       0.493
pvcB
Similar to Pseudomonas aeruginosa pyoverdine biosynthesis protein PvcB SWALL:O30371 (EMBL:AF002222) (291 aa) fasta scores: E(): 7.7e-50, 49.43% id in 263 aa, and to Vibrio cholerae PvcB protein vc1944 SWALL:Q9KQQ4 (EMBL:AE004270) (287 aa) fasta scores: E(): 7.2e-47, 45.09% id in 275 aa.
       0.486
pvcA
Similar to Pseudomonas aeruginosa pyoverdine biosynthesis protein PvcA SWALL:O30370 (EMBL:AF002222) (327 aa) fasta scores: E(): 2.3e-70, 61.38% id in 303 aa, and to Vibrio cholerae PvcA protein vc1949 SWALL:Q9KQP9 (EMBL:AE004270) (608 aa) fasta scores: E(): 2.1e-13, 28.52% id in 284 aa.
       0.486
ECA3381A
Similar to Escherichia coli colicin k immunity protein Cki or CfI SWALL:IMMK_ECOLI (SWALL:Q47503) (96 aa) fasta scores: E(): 1.8, 36.06% id in 61 aa, and to Campylobacter jejuni hypothetical 8.5 kDa protein SWALL:O07090 (EMBL:Y13641) (73 aa) fasta scores: E(): 0.26, 30.61% id in 49 aa.
       0.486
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.