STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3379Similar to Nocardia aerocolonigenes putative glycosyltransferase RbmA or Ngt SWALL:BAC15749 (EMBL:AF534707) (421 aa) fasta scores: E(): 9.7e-34, 31.88% id in 414 aa, and to Streptomyces sp. TP-A0274 N-glycosyltransferase staG SWALL:BAC55209 (EMBL:AB088119) (446 aa) fasta scores: E(): 6.3e-32, 30.76% id in 416 aa. (446 aa)    
Predicted Functional Partners:
pvcA
Similar to Pseudomonas aeruginosa pyoverdine biosynthesis protein PvcA SWALL:O30370 (EMBL:AF002222) (327 aa) fasta scores: E(): 2.3e-70, 61.38% id in 303 aa, and to Vibrio cholerae PvcA protein vc1949 SWALL:Q9KQP9 (EMBL:AE004270) (608 aa) fasta scores: E(): 2.1e-13, 28.52% id in 284 aa.
 
     0.887
pvcB
Similar to Pseudomonas aeruginosa pyoverdine biosynthesis protein PvcB SWALL:O30371 (EMBL:AF002222) (291 aa) fasta scores: E(): 7.7e-50, 49.43% id in 263 aa, and to Vibrio cholerae PvcB protein vc1944 SWALL:Q9KQQ4 (EMBL:AE004270) (287 aa) fasta scores: E(): 7.2e-47, 45.09% id in 275 aa.
 
     0.883
ECA3381A
Similar to Escherichia coli colicin k immunity protein Cki or CfI SWALL:IMMK_ECOLI (SWALL:Q47503) (96 aa) fasta scores: E(): 1.8, 36.06% id in 61 aa, and to Campylobacter jejuni hypothetical 8.5 kDa protein SWALL:O07090 (EMBL:Y13641) (73 aa) fasta scores: E(): 0.26, 30.61% id in 49 aa.
       0.762
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
 
  
 0.728
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
 
  
 0.719
cfa7
Similar to Pseudomonas syringae type I polyketide synthase Cfa7 SWALL:Q9Z3T8 (EMBL:AF098795) (2066 aa) fasta scores: E(): 0, 52.6% id in 2091 aa, and to Streptomyces coelicolor putative type I polyketide synthase sco6275 SWALL:CAD55506 (EMBL:AL939127) (4557 aa) fasta scores: E(): 3e-183, 44.33% id in 1845 aa.
 
  
 0.683
ECA2071
Putative cytochrome P450; Similar to Mycobacterium leprae putative cytochrome P450 ml2088 SWALL:Q9CBE7 (EMBL:AL583924) (434 aa) fasta scores: E(): 7.1e-22, 26.3% id in 422 aa, and to Bacillus subtilis putative cytochrome P450 YjiB SWALL:YJIB_BACSU (SWALL:O34374) (396 aa) fasta scores: E(): 1.8e-20, 27.11% id in 343 aa.
 
 
 0.667
ECA3662
Putative cytochrome; Similar to Bacillus halodurans cytochrome P450 hydroxylase bh0579 SWALL:Q9KFA6 (EMBL:AP001509) (453 aa) fasta scores: E(): 2.2e-24, 26.19% id in 462 aa, and to Vicia sativa cytochrome P450 94a1 cyp94a1 or vagh111 SWALL:C941_VICSA (SWALL:O81117) (514 aa) fasta scores: E(): 2.2e-23, 25.88% id in 483 aa.
 
 
 0.653
ECA1487
Non-ribosomal peptide synthetase; Similar to Pseudomonas syringae syringomycin synthetase SyrE SWALL:O85168 (EMBL:AF047828) (9376 aa) fasta scores: E(): 0, 43.13% id in 6600 aa, and to Anabaena sp. 90 peptide synthetase AdpB SWALL:Q9K5M1 (EMBL:AJ269505) (5060 aa) fasta scores: E(): 2.8e-208, 34.22% id in 4859 aa.
 
   
 0.636
ECA1488
Non-ribosomal peptide synthetase; Similar to Pseudomonas syringae syringomycin synthetase SWALL:O85168 (EMBL:AF047828) (9376 aa) fasta scores: E(): 0, 42.92% id in 7655 aa, and to Pseudomonas sp. MIS38 arthrofactin synthetase c arfC SWALL:BAC67536 (EMBL:AB107223) (5924 aa) fasta scores: E(): 0, 46.8% id in 5469 aa.
 
   
 0.624
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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