STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3385Hypothetical protein; No significant database matches. (96 aa)    
Predicted Functional Partners:
ECA3384
Hypothetical protein; No significant database matches.
 
     0.927
ECA3383
Similar to Ralstonia solanacearum hypothetical protein rsp1543 or rs02099 SWALL:Q8XPU3 (EMBL:AL646085) (104 aa) fasta scores: E(): 0.013, 32.97% id in 94 aa, and to Neisseria meningitidis hypothetical protein Nmb0654 SWALL:Q9K0F3 (EMBL:AE002420) (105 aa) fasta scores: E(): 4.3, 23.25% id in 86 aa.
   
   0.816
ECA4278
Rhs-family protein; Similar to Photorhabdus luminescens Rhs Rhs-corE SWALL:AAN64198 (EMBL:AY144117) (1469 aa) fasta scores: E(): 3.6e-127, 42.61% id in 1361 aa, and to Escherichia coli O157:H7 rhs core protein with extension ecs0605 SWALL:Q8X2J4 (EMBL:AP002552) (1616 aa) fasta scores: E(): 3.9e-80, 37.61% id in 1361 aa.
 
   
 0.766
rhs
Putative RHS protein; Similar to Photorhabdus luminescens Rhs Rhs-corE SWALL:AAN64198 (EMBL:AY144117) (1469 aa) fasta scores: E(): 3.1e-128, 41.64% id in 1395 aa, and to Ralstonia solanacearum putative RHS-related transmembrane protein rsp1137 or rs05482 SWALL:Q8XQT2 (EMBL:AL646083) (1517 aa) fasta scores: E(): 3e-74, 32.03% id in 1330 aa.
 
   
 0.764
ECA3431
Putative membrane protein; Similar to Photorhabdus luminescens Orf3 SWALL:AAN64195 (EMBL:AY144117) (447 aa) fasta scores: E(): 4e-30, 33.47% id in 469 aa, and to Escherichia coli O157:H7 hypothetical protein z0249 z0249 or ecs0217 SWALL:Q8X7X1 (EMBL:AE005197) (499 aa) fasta scores: E(): 2e-25, 30.42% id in 470 aa.
 
  
 0.550
wcaJ
Putative capsular polysaccharide biosynthesis protein; Similar to Escherichia coli putative colanic biosynthesis UDP-glucose lipid carrier transferase WcaJ or b2047 SWALL:WCAJ_ECOLI (SWALL:P71241) (464 aa) fasta scores: E(): 6.8e-69, 43.62% id in 463 aa, and to Klebsiella pneumoniae probable CPS biosynthesis glycosyltransferase SWALL:YC14_KLEPN (SWALL:Q48460) (465 aa) fasta scores: E(): 1e-69, 43.95% id in 455 aa.
   
    0.521
rfbP
Similar to Salmonella typhimurium undecaprenyl-phosphate galactosephosphotransferase RfbP or stm2082 SWALL:RFBP_SALTY (SWALL:P26406) (476 aa) fasta scores: E(): 3e-129, 64.65% id in 464 aa, and to Erwinia amylovora UDP-galactose-lipid carrier transferase amsG SWALL:AMSG_ERWAM (SWALL:Q46628) (477 aa) fasta scores: E(): 2.8e-131, 66.3% id in 466 aa.
   
    0.521
ECA3382
Hypothetical protein; No significant database matches.
       0.488
ECA3382A
Hypothetical protein; No significant database matches.
       0.488
mgtB
Magnesium transport ATPase; Similar to Salmonella typhimurium Mg(2+) transport ATPase MgtB or stm3763 SWALL:ATMB_SALTY (SWALL:P22036) (908 aa) fasta scores: E(): 0, 70.62% id in 909 aa.
  
    0.483
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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