STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3385Hypothetical protein; No significant database matches. (96 aa)    
Predicted Functional Partners:
ECA3384
Hypothetical protein; No significant database matches.
 
     0.927
ECA4278
Rhs-family protein; Similar to Photorhabdus luminescens Rhs Rhs-corE SWALL:AAN64198 (EMBL:AY144117) (1469 aa) fasta scores: E(): 3.6e-127, 42.61% id in 1361 aa, and to Escherichia coli O157:H7 rhs core protein with extension ecs0605 SWALL:Q8X2J4 (EMBL:AP002552) (1616 aa) fasta scores: E(): 3.9e-80, 37.61% id in 1361 aa.
 
   
 0.765
rhs
Putative RHS protein; Similar to Photorhabdus luminescens Rhs Rhs-corE SWALL:AAN64198 (EMBL:AY144117) (1469 aa) fasta scores: E(): 3.1e-128, 41.64% id in 1395 aa, and to Ralstonia solanacearum putative RHS-related transmembrane protein rsp1137 or rs05482 SWALL:Q8XQT2 (EMBL:AL646083) (1517 aa) fasta scores: E(): 3e-74, 32.03% id in 1330 aa.
 
   
 0.763
ECA3383
Similar to Ralstonia solanacearum hypothetical protein rsp1543 or rs02099 SWALL:Q8XPU3 (EMBL:AL646085) (104 aa) fasta scores: E(): 0.013, 32.97% id in 94 aa, and to Neisseria meningitidis hypothetical protein Nmb0654 SWALL:Q9K0F3 (EMBL:AE002420) (105 aa) fasta scores: E(): 4.3, 23.25% id in 86 aa.
       0.751
ECA3431
Putative membrane protein; Similar to Photorhabdus luminescens Orf3 SWALL:AAN64195 (EMBL:AY144117) (447 aa) fasta scores: E(): 4e-30, 33.47% id in 469 aa, and to Escherichia coli O157:H7 hypothetical protein z0249 z0249 or ecs0217 SWALL:Q8X7X1 (EMBL:AE005197) (499 aa) fasta scores: E(): 2e-25, 30.42% id in 470 aa.
 
    0.549
ECA3437
Putative membrane protein; Similar to Rhizobium leguminosarum ImpK SWALL:Q93EC3 (EMBL:AF361470) (510 aa) fasta scores: E(): 3.4e-16, 27.58% id in 232 aa, and to Yersinia pestis putative membrane protein ypo3598 or y0276 SWALL:AAM83868 (EMBL:AJ414157) (255 aa) fasta scores: E(): 4e-46, 46.45% id in 254 aa.
 
    0.504
ECA3382
Hypothetical protein; No significant database matches.
       0.488
ECA3382A
Hypothetical protein; No significant database matches.
       0.488
ECA0482
Putative non-ribosomal peptide synthetase; Similar to Bacillus subtilis fengycin synthetase FenE SWALL:O30981 (EMBL:AF023465) (2554 aa) fasta scores: E(): 1.3e-104, 31.95% id in 1546 aa, and to Pseudomonas putida non-ribosomal peptide synthetase domain protein, putative pp4220 SWALL:AAN69801 (EMBL:AE016789) (2628 aa) fasta scores: E(): 1.1e-112, 31.67% id in 2033 aa.
  
     0.460
ECA3443
Similar to Yersinia pestis hypothetical protein ypo3705 or y0039 SWALL:Q8ZAT5 (EMBL:AJ414158) (146 aa) fasta scores: E(): 2.3e-22, 45.71% id in 140 aa, and to Escherichia coli O157:H7 hypothetical protein z0261 or ecs0230 SWALL:Q8X7U0 (EMBL:AE005198) (137 aa) fasta scores: E(): 3.6e-14, 36.76% id in 136 aa.
 
    0.448
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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